Publications from CBBFrom 2005 and onward
2008Alex S Rajangam, Honqian Yang, Tuula T Teeru, Lars Arvestad, Evolution of a domain conserved in microtubule-associated proteins of eukaryotes, Computational Biology and Chemistry: Advances and Applications, 2008 [URL]
Alex S. Rajangam, Manoj Kumar, Henrik Aspeborg, Gea Guerriero, Lars Arvestad, Podjamas Pansri, Christian J.-L. Brown, Sophia Hober, Kristina Blomqvist, Christina Divne, Ines Ezcurra, Ewa Mellerowicz, Bjorn Sundberg, Vincent Bulone, Tuula T. Teeri, MAP20, a microtubule-associated protein in the secondary cell walls of Populus tremula L. x tremuloides Michx is a target of the cellulose synthesis inhibitor, 2,6-dichlorobenzonitrile, Plant Physiology, 2008 [URL]
H. Birin, Z. Gal-Or, I. Elias, T. Tuller, Inferring Horizontal Transfers in the Presence of Rearrangements by the Minimum Evolution Criterion, Bioinformatics, 2008
2007Isaac Elias, Tamir Tuller, Reconstruction of ancestral genomic sequences using likelihood, J Comput Biol, 2007 [URL]
Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad, primetv: A viewer for reconciled trees, BMC Bioinformatics, 2007 [URL]
Isaac Elias, Jens Lagergren, Fast computation of distance estimators, BMC Bioinformatics, 2007 [URL]
C. Roth, S. Rastogi, L. Arvestad, K. Dittmar, S. Light, D. Ekman, D.A. Liberles, Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms, J Exp Zoolog B Mol Dev Evol, 2007
2006Isaac Elias, Tzvika Hartman, A 1.375-Approximation Algorithm for Sorting by Transpositions, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2006 [URL]
I. Elias, Settling the Intractability of Multiple Alignment, Journal of Computational Biology, 2006
Marcus Hjelm, Mattias Höglund, Jens Lagergren, New Probabilistic Network Models and Algorithms for Oncogenesis, J Comp Biology, 2006
Samuel A. Andersson and
Jens Lagergren, Motif Yggdrasil: Sampling from a Tree Mixture Model, RECOMB, 2006
David Bryant and
Jens Lagergren, Compatibility of unrooted phylogenetic trees is FPT, Theor. Comput. Sci., 2006
Ö. Svensson, L. Arvestad, J. Lagergren, Genome-wide survey for biologically functional pseudogenes, PLoS Comput Biol, 2006
L. Arvestad, Efficient methods for estimating amino acid replacement rates., J Mol Evol, 2006
2005Isaac Elias and
Jens Lagergren, Fast Neighbor Joining., ICALP, 2005 [URL]
Isaac Elias, Tzvika Hartman, A 1.375-Approximation Algorithm for Sorting by Transpositions, Proc. of the 5th International Workshop on Algorithms in Bioinformatics (WABI'05), 2005 [URL]
S. Djerbi, M. Lindskog, L. Arvestad, F. Sterky, T.T. Teeri, The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes, Planta, 2005
V. Hollich, L. Milchert, L. Arvestad, E.L. Sonnhammer, Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction, Mol Biol Evol, 2005
P. Savolainen, C. Fitzsimmons, L. Arvestad, L. Andersson, J. Lundeberg, ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels, Cytogenet Genome Res, 2005
L. Arvestad, N. Visa, J. Lundeberg, L. Wieslander, P. Savolainen, Expressed sequence tags from the midgut and an epithelial cell line of Chironomus tentans: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels., Insect Mol Biol, 2005
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Publications