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School of
Computer Science
and Communication

Publications from CBB

From 2005 and onward

2008

Alex S Rajangam, Honqian Yang, Tuula T Teeru, Lars Arvestad, Evolution of a domain conserved in microtubule-associated proteins of eukaryotes, Computational Biology and Chemistry: Advances and Applications, 2008 [URL]
Alex S. Rajangam, Manoj Kumar, Henrik Aspeborg, Gea Guerriero, Lars Arvestad, Podjamas Pansri, Christian J.-L. Brown, Sophia Hober, Kristina Blomqvist, Christina Divne, Ines Ezcurra, Ewa Mellerowicz, Bjorn Sundberg, Vincent Bulone, Tuula T. Teeri, MAP20, a microtubule-associated protein in the secondary cell walls of Populus tremula L. x tremuloides Michx is a target of the cellulose synthesis inhibitor, 2,6-dichlorobenzonitrile, Plant Physiology, 2008 [URL]

2007

Isaac Elias, Tamir Tuller, Reconstruction of ancestral genomic sequences using likelihood, J Comput Biol, 2007 [URL]
Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad, primetv: A viewer for reconciled trees, BMC Bioinformatics, 2007 [URL]
Isaac Elias, Jens Lagergren, Fast computation of distance estimators, BMC Bioinformatics, 2007 [URL]
C. Roth, S. Rastogi, L. Arvestad, K. Dittmar, S. Light, D. Ekman, D.A. Liberles, Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms, J Exp Zoolog B Mol Dev Evol, 2007

2006

Isaac Elias, Tzvika Hartman, A 1.375-Approximation Algorithm for Sorting by Transpositions, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2006 [URL]
I. Elias, Settling the Intractability of Multiple Alignment, Journal of Computational Biology, 2006
Marcus Hjelm, Mattias Höglund, Jens Lagergren, New Probabilistic Network Models and Algorithms for Oncogenesis, J Comp Biology, 2006
Samuel A. Andersson and Jens Lagergren, Motif Yggdrasil: Sampling from a Tree Mixture Model, RECOMB, 2006
David Bryant and Jens Lagergren, Compatibility of unrooted phylogenetic trees is FPT, Theor. Comput. Sci., 2006
Ö. Svensson, L. Arvestad, J. Lagergren, Genome-wide survey for biologically functional pseudogenes, PLoS Comput Biol, 2006

2005

Isaac Elias and Jens Lagergren, Fast Neighbor Joining., ICALP, 2005 [URL]
Isaac Elias, Tzvika Hartman, A 1.375-Approximation Algorithm for Sorting by Transpositions, Proc. of the 5th International Workshop on Algorithms in Bioinformatics (WABI'05), 2005 [URL]
V. Hollich, L. Milchert, L. Arvestad, E.L. Sonnhammer, Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction, Mol Biol Evol, 2005

Published by: Infomaster <infomaster@csc.kth.se>
Updated 2006-11-08