% Submitted or under preparation \providecommand{\noopsort}[1]{} \providecommand{\doi}[1]{\texttt{doi:#1}} \providecommand{\available}[1]{Available at \texttt{#1}} \providecommand{\availablet}[2]{Available at \texttt{#2}} \begin{thebibliography}{1} \bibitem{thetanote} S.~Engblom. \newblock On well-separated sets and fast multipole methods, 2010. \newblock \available{http://arxiv.org/abs/1006.2269}. \end{thebibliography} % Refereed \providecommand{\noopsort}[1]{} \providecommand{\doi}[1]{\texttt{doi:#1}} \providecommand{\available}[1]{Available at \texttt{#1}} \providecommand{\availablet}[2]{Available at \texttt{#2}} \begin{thebibliography}{1} \bibitem{ssa_parareal} {\noopsort{Engblom20094}}{S.~Engblom}. \newblock Parallel in time simulation of multiscale stochastic chemical kinetics. \newblock {\em Multiscale Model.~Simul.}, 8(1):46--68, 2009. \newblock \doi{10.1137/080733723}. \bibitem{master_spatial} {\noopsort{Engblom20093}}{S.~Engblom and L.~Ferm and A.~Hellander and P.~L{\"o}tstedt}. \newblock Simulation of stochastic reaction-diffusion processes on unstructured meshes. \newblock {\em SIAM J.~Sci.~Comput.}, 31(3):1774--1797, 2009. \newblock \doi{10.1137/080721388}. \bibitem{master_charlier_th} {\noopsort{Engblom20091}}{S.~Engblom}. \newblock Spectral approximation of solutions to the chemical master equation. \newblock {\em J.~Comput.~Appl.~Math.}, 229(1):208--221, 2009. \newblock \doi{10.1016/j.cam.2008.10.029}. \bibitem{master_charlier_app} {\noopsort{Engblom20092}}{S.~Engblom}. \newblock Galerkin spectral method applied to the chemical master equation. \newblock {\em Commun.~Comput.~Phys.}, 5(5):871--896, 2009. \bibitem{vertaxis2D} P.~Deglaire, S.~Engblom, O.~{\AA}gren, and H.~Bernhoff. \newblock Analytical solutions for a single blade in vertical axis turbine motion in two-dimensions. \newblock {\em Eur.~J.~Mech.~B Fluids}, 28(4):506--520, 2009. \newblock \doi{10.1016/j.euromechflu.2008.11.004}. \bibitem{master_moment} S.~Engblom. \newblock Computing the moments of high dimensional solutions of the master equation. \newblock {\em Appl.~Math.~Comput.}, 180(2):498--515, 2006. \newblock \doi{10.1016/j.amc.2005.12.032}. \end{thebibliography} % Theses \providecommand{\noopsort}[1]{} \providecommand{\doi}[1]{\texttt{doi:#1}} \providecommand{\available}[1]{Available at \texttt{#1}} \providecommand{\availablet}[2]{Available at \texttt{#2}} \begin{thebibliography}{1} \bibitem{stefan_phd} S.~Engblom. \newblock {\em Numerical Solution Methods in Stochastic Chemical Kinetics}. \newblock PhD thesis, Uppsala University, 2008. \bibitem{master_lic} S.~Engblom. \newblock {\em Numerical Methods for the Chemical Master Equation}. \newblock Licentiate thesis, Uppsala University, 2006. \newblock No.~2006-007. \bibitem{flmgprecond} S.~Engblom. \newblock Multigrid preconditioners with applications to incompressible {N}avier-{S}tokes equations. \newblock Master's thesis, Dept of Information Technology, Uppsala University, 2002. \end{thebibliography} % Refereed proceedings \providecommand{\noopsort}[1]{} \providecommand{\doi}[1]{\texttt{doi:#1}} \providecommand{\available}[1]{Available at \texttt{#1}} \providecommand{\availablet}[2]{Available at \texttt{#2}} \begin{thebibliography}{1} \bibitem{ssa_parareal_icnaam} S.~Engblom. \newblock Time-parallel simulation of stochastic chemical kinetics. \newblock In T.~E. Simos, editor, {\em Numerical Analysis and Applied Mathematics}, volume 1048 of {\em AIP conference proceedings}, pages 174--177, 2008. \newblock \doi{10.1063/1.2990884}. \end{thebibliography} % Reports (not yet published elsewhere) \providecommand{\noopsort}[1]{} \providecommand{\doi}[1]{\texttt{doi:#1}} \providecommand{\available}[1]{Available at \texttt{#1}} \providecommand{\availablet}[2]{Available at \texttt{#2}} \begin{thebibliography}{1} \bibitem{URDME} J.~Cullhed, S.~Engblom, and A.~Hellander. \newblock The {URDME} manual version 1.0. \newblock Technical Report 2008-022, Dept of Information Technology, Uppsala University, Uppsala, Sweden, 2008. \newblock \available{http://www.it.uu.se/research}. \bibitem{gaussqd} S.~Engblom. \newblock {G}aussian quadratures with respect to discrete measures. \newblock Technical Report 2006-007, Dept of Information Technology, Uppsala University, Uppsala, Sweden, 2006. \newblock \available{http://www.it.uu.se/research}. \bibitem{compact_flow} S.~Engblom, A.~G{\"o}ran, and C.~Adamsson. \newblock A compact difference method for turbulent flow in a channel. \newblock Technical Report 2000:6, Dept of Information Technology, Uppsala University, Uppsala, Sweden, 2000. \end{thebibliography}