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A B C D E F G H I J K L M N O P R S T U V W X Y Z _

## A

abbreviation - Variable in class mro.util.experimentation.ResultTableStructureHandler
abbreviationMap - Variable in class mro.util.experimentation.MeasureAbbreviationTable
ABOUT - Static variable in class infomat.view.menu.Menu
accept(File) - Method in class infomat.io.AllFileFilter
accept(File) - Method in class infomat.io.TextFileFilter
accept(File) - Method in class mro.util.measures.Averagor.XMLFileFilter
accept(File) - Method in class mro.util.properties.XMLFileFilter
accumulate(SparsePixel) - Method in class infomat.view.picture.SparsePixel
accumulateToPool(PropertiesPool, File) - Method in class infomat.Experimentator
actionLeadToChange() - Method in class infomat.view.algorithms.AlgorithmSelectionPanel
actionLeadToChange() - Method in class infomat.view.algorithms.MatrixWeightingSelectionPanel
actionLeadToChange() - Method in class infomat.view.evaluation.EvaluationSelectionPanel
actionLeadToChange() - Method in class infomat.view.grouping.GroupingSelectionPanel
actionLeadToChange() - Method in class infomat.view.similarity.SimilarityPanel
actionLeadToChange() - Method in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
actionPerformed(ActionEvent) - Method in class infomat.view.algorithms.AlgorithmFrame
actionPerformed(ActionEvent) - Method in class infomat.view.algorithms.AlgorithmSelectionPanel
actionPerformed(ActionEvent) - Method in class infomat.view.algorithms.LabelFrame
actionPerformed(ActionEvent) - Method in class infomat.view.algorithms.MatrixFilterFrame
actionPerformed(ActionEvent) - Method in class infomat.view.algorithms.MatrixWeightingFrame
actionPerformed(ActionEvent) - Method in class infomat.view.algorithms.MatrixWeightingSelectionPanel
actionPerformed(ActionEvent) - Method in class infomat.view.evaluation.EvaluationSelectionPanel
actionPerformed(ActionEvent) - Method in class infomat.view.group.GroupFrame
actionPerformed(ActionEvent) - Method in class infomat.view.group.GroupFrame.GroupInfo
actionPerformed(ActionEvent) - Method in class infomat.view.grouping.GroupingSelectionPanel
actionPerformed(ActionEvent) - Method in class infomat.view.grouping.settings.GroupingFilePanel
actionPerformed(ActionEvent) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
actionPerformed(ActionEvent) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
actionPerformed(ActionEvent) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
actionPerformed(ActionEvent) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
actionPerformed(ActionEvent) - Method in class infomat.view.info.PixelInfoPanel.CellsPanel
actionPerformed(ActionEvent) - Method in class infomat.view.InfomatPropertiesFrame
actionPerformed(ActionEvent) - Method in class infomat.view.menu.Menu
actionPerformed(ActionEvent) - Method in class infomat.view.menu.ToolbarController
  Perform the right action for the right command
actionPerformed(ActionEvent) - Method in class infomat.view.pixel.PixelFrame.ControlPanel
actionPerformed(ActionEvent) - Method in class infomat.view.pixel.PixelFrame.GatherPanel
actionPerformed(ActionEvent) - Method in class infomat.view.pixel.PixelFrame.RemovePanel
actionPerformed(ActionEvent) - Method in class infomat.view.pixel.PixelFrame.SelectionPanel
actionPerformed(ActionEvent) - Method in class infomat.view.similarity.SimilarityPanel
actionPerformed(ActionEvent) - Method in class infomat.view.sorter.SorterPanel
actionPerformed(ActionEvent) - Method in class infomat.view.sorter.SorterPanel.GroupInfo
actionPerformed(ActionEvent) - Method in class infomat.view.sorter.SorterPanel.GroupingInfo
actionPerformed(ActionEvent) - Method in class infomat.view.sorter.SorterPanel.Ordering
actionPerformed(ActionEvent) - Method in class infomat.view.tools.EvaluationFrame.EvaluationPanel
actionPerformed(ActionEvent) - Method in class infomat.view.tools.ExportTextFrame
actionPerformed(ActionEvent) - Method in class infomat.view.tools.StoplistFrame
actionPerformed(ActionEvent) - Method in class infomat.view.vector.IVectorIndexPanel
actionPerformed(ActionEvent) - Method in class infomat.view.vector.IVectorPanel
actionPerformed(ActionEvent) - Method in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
actionPerformed(ActionEvent) - Method in class mro.util.measures.dialog.MeasuresPanel
actionPerformed(ActionEvent) - Method in class mro.util.properties.dialog.PropertiesPanel
actionPerformed(ActionEvent) - Method in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
add(float[], float[]) - Method in class infomat.bridges.jsdm.JSDMSimilarity
add(IObject, float) - Method in class infomat.vectorspace.IObjectGroup
  Adds a new IObject in the place the value implicates.
add(IObject) - Method in class infomat.vectorspace.IObjectGroup
  Adds a new IObject at the next place.
add(IObjectGroup) - Method in class infomat.vectorspace.IObjectGrouping
  Adds a IObjectGroup at the next place.
add(IObject) - Method in class infomat.vectorspace.IObjectSet
  Adds a new IObject.
add(IObject, float) - Method in class infomat.vectorspace.IObjectSet
add(T, Float) - Method in class infomat.vectorspace.vector.IVector
  Adds the value f to the previosus value for the T t.
add(IVector<T>) - Method in class infomat.vectorspace.vector.IVector
  Uses the add(T, Float) method.
add(HashMap<T, Float>) - Method in class infomat.vectorspace.vector.IVector
  Uses the add(T, Float) method.
add(IObjectGroup, IObjectGrouping, boolean, InfomatView) - Method in class infomat.view.group.GroupFrameManager
add(Component, String) - Method in class infomat.view.menu.ToolbarView
add(SparsePixel) - Method in class infomat.view.picture.SparsePartPicture
add(String, Vector<String>) - Method in class mro.util.experimentation.MeasureAbbreviationTable
add(RelativeEntry) - Method in class mro.util.experimentation.RelativeTable
add(Result) - Method in class mro.util.experimentation.Result
  Not possible if the Result is relative!
  Does not keep the PropertiesPool as the Property:s of the different Result:s may be different.
addAll(Vector<IObject>) - Method in class infomat.vectorspace.IObjectGroup
  Adds all the IObject:s at the end.
addAll(IVector<IObject>) - Method in class infomat.vectorspace.IObjectGroup
addAllFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
addAllGroups(Vector<IObjectGroup>) - Method in class infomat.vectorspace.IObjectGrouping
  Adds all IObjectGroup:s at the next places.
addAllSelectedToGathered() - Method in class infomat.view.pixel.PixelFrame
addAverageMeasure(AverageMeasure) - Method in class mro.util.measures.AverageMeasureGroup
addAverageMeasureVector(Vector<AverageMeasure>) - Method in class mro.util.measures.AverageMeasureGroup
  Copies the AverageMeasure:s.
addCell(IMatrixCell) - Method in class infomat.vectorspace.IMatrix
  Add a IMatrixCell.
addCell(int, int, float) - Method in class infomat.vectorspace.IMatrix
  Add the value of a column in a row
addCell(int, int, float, float) - Method in class infomat.vectorspace.IMatrix
  Add the value of a column in a row
addCell(int, int, float, float, float) - Method in class infomat.vectorspace.IMatrix
  Add the value of a column in a row
addCellsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
addChild(IObjectGroupNode) - Method in class infomat.vectorspace.IObjectGroupNode
addChild(IObjectGroup) - Method in class infomat.vectorspace.IObjectGroupNode
addColumnIObject(IObject) - Method in class infomat.vectorspace.IMatrix
  Adds a Column IObject to the matrix.
addColumnsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
addDocument(String, int) - Method in class infomat.vectorspace.IMatrix
  adds a Document as a Row to the matrix
addDocument(String, String, int) - Method in class infomat.vectorspace.IMatrix
  adds a Document as a Row to the matrix
addGrouping(IObjectGrouping) - Method in class infomat.vectorspace.IObjectSet
  Adds an IObjectGrouping.
addGroupsAsChildren(IObjectGrouping) - Method in class infomat.vectorspace.IObjectGroupNode
addInfo(File, Measures, PropertiesPool) - Method in class infomat.mro.ExperimentResultGenerator.InfoPool
addMeasure(Measure) - Method in class mro.util.measures.AverageMeasure
addMeasure(Measure) - Method in class mro.util.measures.MeasureGroup
  Adds a Measure of any kind.
addMeasure(Measure) - Method in class mro.util.measures.MultiMeasure
addMeasureVector(Vector) - Method in class mro.util.measures.MeasureGroup
addOneToLocalCount() - Method in class infomat.vectorspace.IMatrixCell
addPartPictureArray(SparsePartPicture[][]) - Method in class infomat.view.picture.SparsePicture
addProperty(Property) - Method in class mro.util.properties.Properties
  Adds a `Property` (or a `PropertyGroup`) to the Properties.
addProperty(Property) - Method in class mro.util.properties.PropertyGroup
addPropertyVector(Vector) - Method in class mro.util.properties.PropertyGroup
addRelatedIdentifier(UniqueIdentifier) - Method in class mro.util.properties.Properties
  Add a `UniqueIdentifier` as a related identifier.
addResult(String, Measures, PropertiesPool) - Method in class mro.util.experimentation.ResultPool
addRGBs(float[], float[]) - Method in class infomat.view.picture.SparsePixel
addRowIObject(IObject) - Method in class infomat.vectorspace.IMatrix
  Adds a Row IObject to the matrix.
addRowsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
addSelectedCellsToGathered() - Method in class infomat.view.pixel.PixelFrame
addSelectedColumnsToGathered() - Method in class infomat.view.pixel.PixelFrame
addSelectedRowsToGathered() - Method in class infomat.view.pixel.PixelFrame
addText(String, String) - Method in class infomat.io.TextWordIMatrixConstructor
addToLocalCount(float) - Method in class infomat.vectorspace.IMatrixCell
addValueDescription(PropertyValueDescription) - Method in class mro.util.properties.Property
addVectorOfValueDescriptions(Vector) - Method in class mro.util.properties.Property
addWord(String, String, int, float, float) - Method in class infomat.io.TextWordIMatrixConstructor
addWord(String, int) - Method in class infomat.vectorspace.IMatrix
  adds a Word as Column to the matrix
addWord(String, int, float) - Method in class infomat.vectorspace.IMatrix
  adds a Word as a Column IObject to the matrix
adjustColumnColorOpacity(float, float, float, float) - Method in class infomat.view.picture.SparsePartPicture
adjustColumnColorOpacity(float, float) - Method in class infomat.view.picture.SparsePicture
adjustColumnColorPixelsToHeight() - Method in class infomat.view.picture.SparsePartPicture
adjustOpacity(Vector<SparsePixel>, float, float, float, float) - Method in class infomat.view.picture.SparsePartPicture
adjustOpacity(float, float, float, float) - Method in class infomat.view.picture.SparsePartPicture
adjustOpacity(float, float) - Method in class infomat.view.picture.SparsePicture
  Change the distribution to be more even over 0.0 ..
aff - Static variable in class infomat.io.TextDirectoryReader
algFrame - Variable in class infomat.view.algorithms.AlgorithmSelectionPanel
algNames - Static variable in class infomat.view.algorithms.AlgorithmSelectionPanel
algorithm - Variable in class infomat.view.algorithms.AlgorithmFrame
AlgorithmFrame - Class in infomat.view.algorithms
  A JFrame for clustering.
AlgorithmFrame(InfomatModel, InfomatView) - Constructor for class infomat.view.algorithms.AlgorithmFrame
algorithmFrame - Variable in class infomat.view.InfomatModel
ALGORITHMFRAME_PREFERRED_SIZE - Variable in class infomat.view.algorithms.AlgorithmFrame
ALGORITHMFRAME_PREFERRED_SIZE - Variable in class infomat.view.tools.EvaluationFrame
ALGORITHMFRAME_PREFERRED_SIZE - Variable in class infomat.view.tools.ExportTextFrame
ALGORITHMFRAME_PREFERRED_SIZE - Variable in class infomat.view.tools.MatrixSummaryFrame
algorithmPanel - Variable in class infomat.view.algorithms.AlgorithmFrame
ALGORITHMS - Static variable in class infomat.view.menu.Menu
algorithmSelectionPanel - Variable in class infomat.view.algorithms.AlgorithmFrame
AlgorithmSelectionPanel - Class in infomat.view.algorithms
  A JPanel for choosing which Clustering Algorithm to use.
AlgorithmSelectionPanel(AlgorithmFrame) - Constructor for class infomat.view.algorithms.AlgorithmSelectionPanel
algPropertiesPanel - Variable in class infomat.view.algorithms.AlgorithmFrame
allB - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
allB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
AllFileFilter - Class in infomat.io
AllFileFilter() - Constructor for class infomat.io.AllFileFilter
allGlobalMeasuresInAGroup() - Method in class infomat.evaluation.IntrinsicEvaluation
allLowercase - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
allMeasuresInAGroup() - Method in class infomat.evaluation.ExtrinsicEvaluation
allMeasuresInAGroup() - Method in class infomat.evaluation.MatrixMeasures
allPanel - Variable in class infomat.view.InfomatPropertiesFrame
alteredProperties() - Method in class infomat.view.InfomatModel
AlternatingButton - Class in infomat.view.util
  A JButton that can be initialized to alter its text between the strings of a string-array when pressed.
AlternatingButton(String[]) - Constructor for class infomat.view.util.AlternatingButton
ambiguous - Variable in class infomat.vectorspace.IObject
apply - Variable in class infomat.view.algorithms.AlgorithmFrame
apply - Variable in class infomat.view.algorithms.LabelFrame
apply - Variable in class infomat.view.algorithms.MatrixFilterFrame
apply - Variable in class infomat.view.algorithms.MatrixWeightingFrame
apply - Variable in class infomat.view.group.GroupFrame
apply - Variable in class infomat.view.InfomatPropertiesFrame
apply - Variable in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
apply - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
apply - Variable in class infomat.view.tools.ExportTextFrame
apply - Variable in class infomat.view.tools.MatrixSummaryFrame
apply - Variable in class infomat.view.tools.StoplistFrame
applyButton - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
associate(JButton, Measure) - Method in class mro.util.measures.dialog.MeasuresPanel
associate(JButton, Property) - Method in class mro.util.properties.dialog.PropertiesPanel
AverageMeasure - Class in mro.util.measures
  Average of a measure.
AverageMeasure() - Constructor for class mro.util.measures.AverageMeasure
AverageMeasure(String, String) - Constructor for class mro.util.measures.AverageMeasure
AverageMeasure(AverageMeasure) - Constructor for class mro.util.measures.AverageMeasure
  Copy Constructor.
AverageMeasure(Measure) - Constructor for class mro.util.measures.AverageMeasure
  Constructs a AverageMeasure consisting of only the given Measure.
AverageMeasureGroup - Class in mro.util.measures
  A group of AverageMeasure:s for the purpose of calcuation.
AverageMeasureGroup(String, String) - Constructor for class mro.util.measures.AverageMeasureGroup
AverageMeasureGroup(AverageMeasureGroup) - Constructor for class mro.util.measures.AverageMeasureGroup
  Copy Constructor.
averageMeasureVector - Variable in class mro.util.measures.AverageMeasureGroup
  The vector of AverageMeasure:s.
Averagor - Class in mro.util.measures
  Averagor.
Averagor() - Constructor for class mro.util.measures.Averagor
Averagor.XMLFileFilter - Class in mro.util.measures
Averagor.XMLFileFilter() - Constructor for class mro.util.measures.Averagor.XMLFileFilter
avgCellsPerObjInGroup(IObjectGroup) - Method in class infomat.evaluation.MatrixMeasures
avgColsInRows() - Method in class infomat.vectorspace.IMatrix
avgRowsInCols() - Method in class infomat.vectorspace.IMatrix

## B

badInput(String) - Static method in class infomat.Clusterer
badInput(String) - Static method in class infomat.Experimentator
badInput(String) - Method in class infomat.mro.Experimentator
badInput(String) - Method in class infomat.mro.ExperimentatorNumberOfWords
badInput(String) - Method in class infomat.mro.ExperimentatorReductionReduction
badInput(String) - Method in class infomat.mro.ExperimentResultGenerator
badInput(String) - Method in class infomat.mro.FileConverter
badInput() - Static method in class infomat.WriteProperties
badInput(String) - Method in class mro.util.experimentation.ExperimentResultGenerator
badInput() - Static method in class mro.util.experimentation.ResultTableStructure
beginsWithSeparator(String) - Static method in class mro.util.PathHelper
BisectingKMeans - Class in infomat.algorithms.grouping
  Bisecting KMeans
BisectingKMeans() - Constructor for class infomat.algorithms.grouping.BisectingKMeans
BisectingKMeans(Properties) - Constructor for class infomat.algorithms.grouping.BisectingKMeans
BisectingKMeans(ISimilarity) - Constructor for class infomat.algorithms.grouping.BisectingKMeans
BisectingKMeans(ISimilarity, Properties) - Constructor for class infomat.algorithms.grouping.BisectingKMeans
bisectingKmeansClusteringNumber - Static variable in class infomat.algorithms.grouping.BisectingKMeans
border - Variable in class infomat.view.picture.SparsePartPicture
borderColor - Variable in class infomat.view.picture.SparsePartPicture
bottomIObjectGroupNodes - Variable in class infomat.vectorspace.HierarchicalIObjectGrouping
buffer - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
buffer - Variable in class infomat.io.IMatrixIO.IMatrixHandler
buffer - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
buffer - Variable in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
buffer - Variable in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
buffer - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
buffer - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
buffer - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
buffer - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
buffer - Variable in class mro.util.experimentation.ResultTableStructureHandler
buffer - Variable in class mro.util.experimentation.TableHandler
buffer - Variable in class mro.util.measures.MeasuresHandler
buffer - Variable in class mro.util.properties.PropertiesHandler
button - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
button - Variable in class infomat.view.grouping.GroupingSelectionPanel
button - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
button - Variable in class infomat.view.sorter.SorterPanel.Ordering
buttonMeasureMap - Variable in class mro.util.measures.dialog.MeasuresPanel
buttonPanel - Variable in class infomat.view.info.PixelInfoPanel.CellsPanel
buttonPropertyMap - Variable in class mro.util.properties.dialog.PropertiesPanel
buttons - Variable in class infomat.view.menu.ToolbarView

## C

c - Variable in class infomat.io.IMatrixIO.IMatrixHandler
calc - Variable in class infomat.view.sorter.SorterPanel.SorterMethodPanel
calculate() - Method in class mro.util.measures.AverageMeasure
calculate() - Method in class mro.util.measures.AverageMeasureGroup
  Really slow.
calculateAllMeasures() - Method in class infomat.evaluation.Evaluation
calculateAllMeasures() - Method in class infomat.evaluation.ExtrinsicEvaluation
calculateAllMeasures() - Method in class infomat.evaluation.IntrinsicEvaluation
calculateAllMeasures() - Method in class infomat.evaluation.MatrixMeasures
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.bridges.jsdm.RIClusterer
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.bridges.jsdm.RIWrapperClusterer
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.ExampleClusterer
calculateAndSaveEvaluation(IMatrix, IObjectGrouping, IObjectGrouping, String, long) - Method in class infomat.mro.Experimentator
  Stamps the Measures:s with the same time as a stamp.
calculateAndSaveEvaluation(IMatrix, IObjectGrouping, IObjectGrouping, String, long) - Method in class infomat.mro.ExperimentatorNumberOfWords
  Stamps the Measures:s with the same time as a stamp.
calculateAndSaveEvaluation(IMatrix, IObjectGrouping, IObjectGrouping, String, long) - Method in class infomat.mro.ExperimentatorReductionReduction
  Stamps the Measures:s with the same time as a stamp.
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.mro.JohanEvaluator
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.mro.JohanPrepare
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.mro.NegationClusterer
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.mro.WTClusterer
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.mro.WTExperimentator
calculateAndSaveEvaluation(Evaluation, String) - Static method in class infomat.Test
calculateBasicMatrixMeasures() - Method in class infomat.evaluation.MatrixMeasures
calculateBasicMeasures() - Method in class infomat.evaluation.ExtrinsicEvaluation
calculateGlobalMeasures() - Method in class infomat.evaluation.ExtrinsicEvaluation
calculateGlobalPairMeasures() - Method in class infomat.evaluation.ExtrinsicEvaluation
calculateGroupingMeasures(String) - Method in class infomat.evaluation.IntrinsicEvaluation
calculateGroupingMeasures(IObjectGrouping, String) - Method in class infomat.evaluation.MatrixMeasures
calculateGroupMeasures() - Method in class infomat.evaluation.ExtrinsicEvaluation
calculateGroupMeasures() - Method in class infomat.evaluation.IntrinsicEvaluation
calculateOneGroupMeasures(IObjectGroup, int, HashMap<IObjectGroup, Measure>, HashMap<IObjectGroup, Measure>, HashMap<IObjectGroup, Measure>) - Method in class infomat.evaluation.ExtrinsicEvaluation
calculateOneGroupMeasures(IObjectGroup, int, HashMap<IObjectGroup, Measure>, HashMap<IObjectGroup, Measure>) - Method in class infomat.evaluation.IntrinsicEvaluation
cancel - Variable in class infomat.view.algorithms.AlgorithmFrame
cancel - Variable in class infomat.view.algorithms.LabelFrame
cancel - Variable in class infomat.view.algorithms.MatrixFilterFrame
cancel - Variable in class infomat.view.algorithms.MatrixWeightingFrame
cancel - Variable in class infomat.view.group.GroupFrame
cancel - Variable in class infomat.view.InfomatPropertiesFrame
cancel - Variable in class infomat.view.tools.ExportTextFrame
cancel - Variable in class infomat.view.tools.MatrixSummaryFrame
cancel - Variable in class infomat.view.tools.StoplistFrame
caption - Variable in class mro.util.experimentation.ResultTableStructure
categorization - Variable in class infomat.mro.Experimentator
categorization - Variable in class infomat.mro.ExperimentatorNumberOfWords
categorization - Variable in class infomat.mro.ExperimentatorReductionReduction
cb - Variable in class infomat.view.vector.IVectorIndexPanel
cBox - Variable in class infomat.view.algorithms.AlgorithmSelectionPanel
cBox - Variable in class infomat.view.algorithms.MatrixWeightingSelectionPanel
cBox - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
cBox - Variable in class infomat.view.grouping.GroupingSelectionPanel
cBox - Variable in class infomat.view.similarity.SimilarityPanel
cBox - Variable in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
cBox - Variable in class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
cBox - Variable in class infomat.view.sorter.SorterPanel.SortingChoicePanel
cBox - Variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
cellB - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
cellB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
cellMap - Variable in class infomat.vectorspace.IMatrix
cells - Variable in class infomat.view.pixel.PixelPanel
cellsPanel - Variable in class infomat.view.info.PixelInfoPanel
cellsScrollPane - Variable in class infomat.view.info.PixelInfoPanel.CellsPanel
CentroidBoostLabeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups.
CentroidBoostLabeler() - Constructor for class infomat.algorithms.labeling.CentroidBoostLabeler
CentroidLabeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups, the first in the centroid.
CentroidLabeler() - Constructor for class infomat.algorithms.labeling.CentroidLabeler
CentroidLabeler(Properties) - Constructor for class infomat.algorithms.labeling.CentroidLabeler
CentroidRankingBoostLabeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups.
CentroidRankingBoostLabeler() - Constructor for class infomat.algorithms.labeling.CentroidRankingBoostLabeler
changeColumnOpacity() - Method in class infomat.view.InfomatView
changeGroupingPanel - Variable in class infomat.view.sorter.SorterPanel
changeIVector(IVector<T>) - Method in class infomat.view.vector.IVectorPanel
changeOpacity() - Method in class infomat.view.InfomatView
changePartPictures() - Method in class infomat.view.InfomatOverview
  Called by the Observer
changePartPictures() - Method in class infomat.view.InfomatView
changeToNewColors() - Method in class infomat.view.grouping.settings.GroupingColoring
characters(char[], int, int) - Method in class infomat.bridges.jsdm.RIIO.RIHandler
characters(char[], int, int) - Method in class infomat.io.IMatrixIO.IMatrixHandler
characters(char[], int, int) - Method in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
characters(char[], int, int) - Method in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
characters(char[], int, int) - Method in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
characters(char[], int, int) - Method in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
characters(char[], int, int) - Method in class infomat.mro.synlex.SynlexIO.SynlexHandler
characters(char[], int, int) - Method in class infomat.vectorspace.CorpusIO.CorpusHandler
characters(char[], int, int) - Method in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
characters(char[], int, int) - Method in class mro.util.experimentation.ResultTableStructureHandler
characters(char[], int, int) - Method in class mro.util.experimentation.TableHandler
characters(char[], int, int) - Method in class mro.util.measures.MeasuresHandler
characters(char[], int, int) - Method in class mro.util.properties.PropertiesHandler
checkClustererProperties(Properties) - Static method in class infomat.Clusterer
checkInput(String[]) - Method in class infomat.mro.Experimentator
checkInput(String[]) - Method in class infomat.mro.ExperimentatorNumberOfWords
checkInput(String[]) - Method in class infomat.mro.ExperimentatorReductionReduction
checkInput(String[]) - Method in class infomat.mro.ExperimentResultGenerator
checkInput(String[]) - Method in class infomat.mro.FileConverter
checkInput(String[]) - Method in class mro.util.experimentation.ExperimentResultGenerator
checkInputReturnDirectory(String[], String) - Static method in class infomat.Clusterer
children - Variable in class infomat.vectorspace.IObjectGroupNode
choices - Variable in class infomat.view.pixel.PixelFrame.ControlPanel
cid - Variable in class infomat.io.IMatrixIO.IMatrixHandler
classNamePropertiesMap - Variable in class mro.util.properties.PropertiesPool
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.BisectingKMeans
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.BisectingKMeans
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.GroupingAlgorithm
  Clusters the entire IObjectSet.
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.GroupingAlgorithm
  Clusters the IObjectGroup.
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.IVectorCategorizer
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.IVectorCategorizer
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.KMeans
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.KMeans
cluster(IObjectGroup, SparseISimilarity) - Method in class infomat.algorithms.grouping.KMeans
cluster(IObjectGroup, DenseISimilarity) - Method in class infomat.algorithms.grouping.KMeans
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.LocationGrouper
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.LocationGrouper
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.RandomClusterer
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.RandomClusterer
cluster(IObjectGroup) - Method in class infomat.algorithms.grouping.RelativeClusterer
  The algorithm clusters the opposite dimension specified in the ISimilarity.
cluster(IObjectSet) - Method in class infomat.algorithms.grouping.RelativeClusterer
  The algorithm clusters the opposite dimension specified in the ISimilarity.
cluster(IObjectGroup, GroupingAlgorithm) - Method in class infomat.algorithms.grouping.TopDownSplitter
cluster(IObjectSet, GroupingAlgorithm) - Method in class infomat.algorithms.grouping.TopDownSplitter
cluster(String, Vector<GroupingAlgorithm>, Weighter) - Method in class infomat.mro.Experimentator
cluster(String, Vector<GroupingAlgorithm>, Weighter) - Method in class infomat.mro.ExperimentatorNumberOfWords
cluster(String, Vector<GroupingAlgorithm>, Weighter) - Method in class infomat.mro.ExperimentatorReductionReduction
cluster() - Method in class infomat.view.InfomatModel
clusterApply - Variable in class infomat.view.algorithms.LabelFrame
Clusterer - Class in infomat
  Class for running clustering tasks without the GUI.
Clusterer(PropertiesPool) - Constructor for class infomat.Clusterer
CLUSTERINGALGORITHMS - Static variable in class infomat.view.menu.Menu
cObjectGroups - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
cobjects - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
cog - Variable in class infomat.vectorspace.IObjectGroup.IObjectComparator
coging - Variable in class infomat.view.grouping.settings.GroupingColoring
col - Variable in class mro.util.experimentation.ResultTableStructureHandler
col - Variable in class mro.util.experimentation.TableHandler
colB - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
colB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
colColorPanel - Variable in class infomat.view.grouping.GroupingPanel
colFrom - Variable in class infomat.view.InfomatView
colFrom - Variable in class infomat.view.picture.SparsePartPicture
colFrom - Variable in class infomat.view.picture.SparsePicture
colFrom - Static variable in class infomat.view.picture.SparsePictureConstructor
colGrouping - Static variable in class infomat.view.picture.SparsePictureConstructor
colGroupingManager - Variable in class infomat.view.InfomatView
colLabel - Variable in class infomat.view.info.PixelInfoPanel.CellPanel
colLabel - Variable in class infomat.view.menu.ToolbarView.InfoPanel
color - Variable in class infomat.view.grouping.settings.GroupingFilePanel
coloring - Variable in class infomat.view.grouping.settings.GroupingSettings
coloringChanged() - Method in class infomat.view.grouping.settings.GroupingSettings
colorPanel - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
colorPanel - Variable in class infomat.view.grouping.GroupingSelectionPanel
colorPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
colorPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
colorPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Groups
COLOURING - Static variable in class infomat.view.menu.Menu
colPanel - Variable in class infomat.view.grouping.GroupingPanel
colPanel - Variable in class infomat.view.info.PixelInfoFrame
cols - Variable in class infomat.vectorspace.IMatrix
colSet - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
colShowPanel - Variable in class infomat.view.grouping.GroupingPanel
colSimPanel - Variable in class infomat.view.similarity.SimilarityFrame
colTo - Variable in class infomat.view.InfomatView
colTo - Variable in class infomat.view.picture.SparsePartPicture
colTo - Variable in class infomat.view.picture.SparsePicture
colTo - Static variable in class infomat.view.picture.SparsePictureConstructor
COLUMN_DIMENSION_NAME - Static variable in class infomat.view.InfomatView
columnColoringKind - Static variable in class infomat.view.picture.SparsePictureConstructor
  columnColoringKind 0 - per column 1 - per partPicture row and column
columnColorMap - Variable in class infomat.view.picture.SparsePartPicture
columnGrid - Variable in class infomat.view.InfomatView
columnGroup - Variable in class infomat.view.picture.SparsePartPicture
columnIObjectSet(IObjectSet) - Method in class infomat.vectorspace.IMatrix
columnObject - Variable in class infomat.vectorspace.IMatrixCell
columnOpacityChanged() - Method in class infomat.view.InfomatView
columns - Variable in class infomat.view.pixel.PixelPanel
columnSimilarity - Variable in class infomat.view.similarity.SimilarityManager
columnTitleMap - Variable in class mro.util.experimentation.ResultTable
columnTitles - Variable in class infomat.mro.ExperimentResultGenerator
columnTitles - Variable in class mro.util.experimentation.ResultTableStructure
CombinedCentroidLabeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups.
CombinedCentroidLabeler() - Constructor for class infomat.algorithms.labeling.CombinedCentroidLabeler
commonLocation - Variable in class infomat.io.IMatrixIO.IMatrixHandler
commonPath - Static variable in class infomat.vectorspace.IObject
CommonPath - Class in mro.util
  Used to reduce tha amount of memory used when storing several file names with one or several similar paths.
CommonPath() - Constructor for class mro.util.CommonPath
commonPath - Variable in class mro.util.experimentation.PathTable
commonStart(String, String) - Static method in class mro.util.CommonPath
compare(Object, Object) - Method in class infomat.algorithms.labeling.IObjectFloatMapEntryComparator
compare(Object, Object) - Method in class infomat.algorithms.labeling.IObjectWeightComparator
compare(Object, Object) - Method in class infomat.vectorspace.IObjectGroup.IObjectComparator
  Compares two IObject:s and returns 1, 0 or -1
compare(Object, Object) - Method in class infomat.vectorspace.IObjectGroup.MapEntryComparator
  Compares two IObject:s and returns 1, 0 or -1
compare(Object, Object) - Method in class infomat.vectorspace.IObjectLexicalComparator
  Compares two IObject:s lexically and returns 1, 0 or -1
compare(Object, Object) - Method in class infomat.vectorspace.MeasureSorter.GroupMeasureComparator
compare(Object, Object) - Method in class infomat.vectorspace.ordering.IObjectFloatSorter.MapEntryComparator
  Compares two IObject:s and returns 1, 0 or -1
compare(T, T) - Method in class infomat.vectorspace.vector.IVector.TLiteralComparator
compare(T, T) - Method in class infomat.vectorspace.vector.IVector.TValueComparator
compare(Object, Object) - Method in class infomat.view.picture.SparsePixel.IMatrixCellWeightComparator
  Compares two IMatrixCells:s and returns 1, 0 or -1
compare(Object, Object) - Method in class mro.util.measures.MeasureComparator
  Compares two Measures and returns 1, 0 or -1
compare(Object, Object) - Method in class mro.util.measures.MeasureStampComparator
  Compares two Measures and returns 1, 0 or -1
compareTo(Object) - Method in class mro.util.experimentation.RelativeEntry
componentHidden(ComponentEvent) - Method in class infomat.view.InfomatOverview
componentHidden(ComponentEvent) - Method in class infomat.view.InfomatView
componentMoved(ComponentEvent) - Method in class infomat.view.InfomatOverview
componentMoved(ComponentEvent) - Method in class infomat.view.InfomatView
componentResized(ComponentEvent) - Method in class infomat.view.InfomatOverview
componentResized(ComponentEvent) - Method in class infomat.view.InfomatView
componentShown(ComponentEvent) - Method in class infomat.view.InfomatOverview
componentShown(ComponentEvent) - Method in class infomat.view.InfomatView
confusionMatrix - Variable in class infomat.evaluation.ExtrinsicEvaluation
confusionMatrix - Variable in class infomat.evaluation.ExtrinsicGroupEvaluation
construct() - Method in class mro.util.experimentation.ResultTable
constructAlgorithms() - Method in class infomat.algorithms.grouping.BisectingKMeans
constructAverageMeasures(MeasureGroup) - Method in class mro.util.measures.MeasureGroup
  Constructs a new MeasureGroup with AverageMeasure:s from the Measure:s in this and the specified MeasureGroup.
constructAverageMeasuresRecuresively(MeasureGroup, MeasureGroup) - Method in class mro.util.measures.MeasureGroup
constructConfusionMatrix() - Method in class infomat.evaluation.ExtrinsicEvaluation
constructConfusionMatrix(IObjectGrouping, IObjectGrouping) - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
constructCorrespondingGroup(IObjectGroup) - Method in class infomat.vectorspace.IMatrix
  Returns the corresponding group, i.e.
constructCSVMatrixFile(String) - Method in class mro.util.experimentation.ResultTable
constructCSVMatrixFile(File) - Method in class mro.util.experimentation.ResultTable
constructLatexTableFile(String) - Method in class mro.util.experimentation.ResultTable
constructLatexTableFile(File) - Method in class mro.util.experimentation.ResultTable
constructLeftPanel() - Method in class infomat.view.tools.StoplistFrame
constructMatlabMatrixFile(String) - Method in class mro.util.experimentation.ResultTable
constructMatlabMatrixFile(File) - Method in class mro.util.experimentation.ResultTable
constructMatrixFile(File, int) - Method in class mro.util.experimentation.ResultTable
  "kind" -> 0 - Matlab matrix 1 - csv (MS Excel)
constructMeasureMap() - Method in class mro.util.experimentation.ResultTable
  No error handling!
constructMiddlePanel() - Method in class infomat.view.tools.StoplistFrame
constructReferenceGrouping(Properties, IMatrix) - Static method in class infomat.Clusterer
constructRelative(RelativeTable) - Method in class mro.util.experimentation.ResultTable
constructRightPanel() - Method in class infomat.view.tools.StoplistFrame
constructSimilarity() - Method in class infomat.mro.Experimentator
constructSimilarity() - Method in class infomat.mro.ExperimentatorNumberOfWords
constructSimilarity() - Method in class infomat.mro.ExperimentatorReductionReduction
constructSimilarityMeasure(PropertiesPool, IMatrix, boolean) - Static method in class infomat.Clusterer
constructStopIObjectsFromStopStrings(IMatrix, boolean) - Method in class infomat.vectorspace.Stoplist
  Adapts the stoplist to the specified matrix and dimension.
constructStopStringsFromStopIObjects() - Method in class infomat.vectorspace.Stoplist
  Constructs a stoplist of String:s from the current set of IObjects.
container - Variable in class infomat.view.info.PixelInfoFrame
container - Variable in class infomat.view.InfomatOverview
container - Variable in class infomat.view.pixel.PixelFrame
containerPanel - Variable in class infomat.view.group.GroupFrame
containerPanel - Variable in class infomat.view.info.PixelInfoFrame
containerPanel - Variable in class infomat.view.pixel.PixelFrame
contains(IObject) - Method in class infomat.vectorspace.IObjectGroup
  Returns true when the IObjectGroup contains the IObject.
contains(IObjectGroup) - Method in class infomat.vectorspace.IObjectGrouping
contains(T) - Method in class infomat.vectorspace.vector.IVector
containsIObjectGroup(IObjectGroup) - Method in class infomat.vectorspace.IObjectGrouping
  Returns true if this IObjectGrouping contains the IObjectGroup.
containsIObjectGroup(IObjectGroup) - Method in class infomat.vectorspace.IObjectSet
  Returns true if any of the IObjectGrouping:s that order this IObjectSet contains the IObjectGroup.
containsIObjectGrouping(IObjectGrouping) - Method in class infomat.vectorspace.IObjectSet
  Returns true if the IObjectGrouping orders this IObjectSet.
containsPrecisely(Vector<IObject>) - Method in class infomat.vectorspace.IObjectGroup
  Returns true if the IObjectGroup contains these IObject:s and no other.
controller - Variable in class infomat.view.menu.ToolbarView
controlPanel - Variable in class infomat.view.pixel.PixelFrame
convertToCurrentFileSeparator(String) - Static method in class mro.util.PathHelper
coordToPixelMap - Variable in class infomat.view.picture.SparsePicture
copy(Measure) - Static method in class mro.util.measures.MeasureGroup
  Deep copy.
copyMoods - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
copyVectorVector(Vector<Vector<T>>) - Static method in class mro.util.experimentation.ResultTable
CorpusIO - Class in infomat.vectorspace
  For loading and saving a Corpus.
CorpusIO() - Constructor for class infomat.vectorspace.CorpusIO
CorpusIO.CorpusHandler - Class in infomat.vectorspace
  Exports the corpus in XML format The file is saved in compressed .zip-format.
CorpusIO.CorpusHandler(IMatrix, boolean) - Constructor for class infomat.vectorspace.CorpusIO.CorpusHandler
counted() - Method in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
counter - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
CountWeighter - Class in infomat.vectorspace.weighting
  A class for weighting of a IMatrix.
CountWeighter() - Constructor for class infomat.vectorspace.weighting.CountWeighter
CountWeighter(Properties) - Constructor for class infomat.vectorspace.weighting.CountWeighter
createAhead - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
CurrentClassGetter - Class in mro.util
CurrentClassGetter() - Constructor for class mro.util.CurrentClassGetter
currentColObject - Variable in class infomat.view.info.PixelInfoPanel
currentColorButton - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
currentColoring - Variable in class infomat.view.grouping.settings.GroupingSettingsManager
currentColumnGrouping - Variable in class infomat.view.pixel.PixelPanel
currentGrouping - Variable in class infomat.vectorspace.IObjectSet
currentIdentifier - Variable in class mro.util.properties.PropertiesHandler
currentIoging - Variable in class infomat.view.sorter.SorterPanel
currentPixel - Variable in class infomat.view.info.PixelInfoPanel.CellsPanel
currentPixelPanel - Variable in class infomat.view.pixel.PixelFrame
currentRowGrouping - Variable in class infomat.view.pixel.PixelPanel
currentRowObject - Variable in class infomat.view.info.PixelInfoPanel
currentSeparator - Static variable in class mro.util.PathHelper
currentSet - Variable in class infomat.io.IMatrixIO.IMatrixHandler
currentStringNumber - Variable in class infomat.view.util.AlternatingButton
currentTable - Variable in class mro.util.experimentation.ResultTableStructureHandler
currentTableKind - Variable in class mro.util.experimentation.ResultTableStructureHandler
currentType - Variable in class mro.util.measures.MeasuresHandler

## D

def - Variable in class mro.util.properties.dialog.PropertiesPanel.FilePanel
defaultColors - Static variable in class infomat.view.grouping.settings.GroupingColoring
defaultSettingsFile - Static variable in class infomat.view.InfomatModel
DenseISimilarity - Class in infomat.vectorspace.similarity
  Similarity measure for a dense matrix representation.
DenseISimilarity() - Constructor for class infomat.vectorspace.similarity.DenseISimilarity
description - Variable in class mro.util.measures.Measure
description - Variable in class mro.util.measures.MeasuresHandler
description - Variable in class mro.util.properties.Properties
  Info about the Properties (and its owning class).
description - Variable in class mro.util.properties.PropertiesHandler
description - Variable in class mro.util.properties.PropertyGroup
  Info about the Properties (and its owning class).
deselAllB - Variable in class infomat.view.vector.IVectorPanel
difference(AverageMeasure) - Method in class mro.util.measures.AverageMeasure
  Constructs a AverageMeasure containing the difference between this and an other AverageMeasure for each Measure in the Vector.
difference(Measure) - Method in class mro.util.measures.Measure
  Constructs a Measure containing the difference between this and an other Measure.
dimension - Static variable in class infomat.view.picture.SparsePictureConstructor
dimensionality - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
DimensionInfoPanel - Class in infomat.view.info
DimensionInfoPanel(InfomatModel, InfomatView, boolean) - Constructor for class infomat.view.info.DimensionInfoPanel
DimensionInfoPanel.InfoLabel - Class in infomat.view.info
DimensionInfoPanel.InfoLabel(String) - Constructor for class infomat.view.info.DimensionInfoPanel.InfoLabel
DIMENSIONINFOPANLE_PREFERRED_HEIGHT - Static variable in class infomat.view.info.DimensionInfoPanel
dirName - Variable in class mro.util.experimentation.Result
dispose(IObjectGroup) - Method in class infomat.view.group.GroupFrameManager
dispose(GroupFrame) - Method in class infomat.view.group.GroupFrameManager
disposeAll() - Method in class infomat.view.group.GroupFrameManager
divide(AverageMeasure) - Method in class mro.util.measures.AverageMeasure
divide(AverageMeasureGroup) - Method in class mro.util.measures.AverageMeasureGroup
divide(Measure) - Method in class mro.util.measures.Measure
divide(MeasureGroup) - Method in class mro.util.measures.MeasureGroup
divideValuesBy(int) - Method in class infomat.view.picture.SparsePixel
docId - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
docSim - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
documentGroupId - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
DocumentGroupingIO - Class in infomat.vectorspace
  For loading and saving a DocumentGrouping.
DocumentGroupingIO(IMatrix) - Constructor for class infomat.vectorspace.DocumentGroupingIO
DocumentGroupingIO.DocumentGroupingHandler - Class in infomat.vectorspace
  Nested class to handle XML parsing.
DocumentGroupingIO.DocumentGroupingHandler(IMatrix) - Constructor for class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
documentGroupingNumberIter - Static variable in class infomat.vectorspace.DocumentGroupingIO
documentGroupName - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
documentId - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
documentLabels - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
documentPath - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
documentsIndexed - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
doIt() - Method in class infomat.Clusterer
doIt() - Method in class infomat.Experimentator
doIt(String[]) - Method in class infomat.mro.Experimentator
doIt(String[]) - Method in class infomat.mro.ExperimentatorNumberOfWords
doIt(String[]) - Method in class infomat.mro.ExperimentatorReductionReduction
doIt(String[]) - Method in class infomat.mro.ExperimentResultGenerator
doIt(String[]) - Method in class infomat.mro.FileConverter
doIt(String[]) - Method in class mro.util.experimentation.ExperimentResultGenerator
doOneDirectory(File) - Method in class infomat.mro.Experimentator
doOneDirectory(File) - Method in class infomat.mro.ExperimentatorNumberOfWords
doOneDirectory(File) - Method in class infomat.mro.ExperimentatorReductionReduction
doOneDirectory(File) - Method in class infomat.mro.ExperimentResultGenerator
doOneDirectory(String) - Method in class mro.util.experimentation.ExperimentResultGenerator
doOneExperiment(PropertiesPool, File) - Method in class infomat.Experimentator
doOneFile(File) - Method in class infomat.io.TextDirectoryReader
dotProduct(IVector<U>, IVector<V>) - Static method in class infomat.vectorspace.vector.IVector
  Returns the scalar product of the two IVector:s.
DoubleHashMap - Class in mro.util.doublehashmap
  A DoubleHashMap has two indexes.
DoubleHashMap() - Constructor for class mro.util.doublehashmap.DoubleHashMap
dragged(IObject, IObject, boolean) - Method in class infomat.view.InfomatView
dragStartColObject - Variable in class infomat.view.InfomatView
dragStartColObject - Variable in class infomat.view.picture.SparsePicture
dragStartRowObject - Variable in class infomat.view.InfomatView
dragStartRowObject - Variable in class infomat.view.picture.SparsePicture
draw - Variable in class infomat.view.picture.Guide
draw(int, int) - Method in class infomat.view.picture.Guide
drawable - Variable in class infomat.view.picture.Guide
drawZoomRect(Graphics) - Method in class infomat.view.picture.SparsePicture
DummyClass - Class in mro.util.properties.dialog
DummyClass(Properties) - Constructor for class mro.util.properties.dialog.DummyClass

## E

endDocument() - Method in class infomat.bridges.jsdm.RIIO.RIHandler
endElement(String, String, String) - Method in class infomat.bridges.jsdm.RIIO.RIHandler
endElement(String, String, String) - Method in class infomat.io.IMatrixIO.IMatrixHandler
endElement(String, String, String) - Method in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
endElement(String, String, String) - Method in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
endElement(String, String, String) - Method in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
endElement(String, String, String) - Method in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
endElement(String, String, String) - Method in class infomat.mro.synlex.SynlexIO.SynlexHandler
endElement(String, String, String) - Method in class infomat.vectorspace.CorpusIO.CorpusHandler
endElement(String, String, String) - Method in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
endElement(String, String, String) - Method in class mro.util.experimentation.ResultTableStructureHandler
endElement(String, String, String) - Method in class mro.util.experimentation.TableHandler
endElement(String, String, String) - Method in class mro.util.measures.MeasuresHandler
endElement(String, String, String) - Method in class mro.util.properties.PropertiesHandler
endElementPartXML(StringBuffer, String) - Method in class mro.util.UniqueIdentifier
  Use when defining a `DefaultHandler` to parse a larger XML-file where a UniqueIdentifier is a part.
endElementPartXML(StringBuffer, String) - Method in interface mro.util.XMLPartIO
  Use when defining a `DefaultHandler` to parse a larger XML-file where the implementing class is a part.
endsWithSeparator(String) - Static method in class mro.util.PathHelper
engStoplistFileName - Static variable in class infomat.mro.Experimentator
engStoplistFileName - Static variable in class infomat.mro.ExperimentatorNumberOfWords
engStoplistFileName - Static variable in class infomat.mro.ExperimentatorReductionReduction
engStoplistFileName - Static variable in class infomat.mro.JohanPrepare
engStoplistFileName - Static variable in class infomat.mro.NegationClusterer
engStoplistFileName - Static variable in class infomat.mro.WTClusterer
engStoplistFileName - Static variable in class infomat.mro.WTExperimentator
enter() - Method in class infomat.view.picture.Guide
entropy() - Method in class infomat.evaluation.ExtrinsicEvaluation
entropy(IObjectGroup) - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
equals(Properties) - Method in class mro.util.properties.Properties
  Returns true if: 1) the Properties:s have the same name, 2) all Property:s (including PropertyGroup:s) have the same name and are in the same order, and the Property:s have the same values.
equals(Property) - Method in class mro.util.properties.Property
  Checks for similarity on all instance variable, except "valueDescriptions".
equals(PropertyGroup) - Method in class mro.util.properties.PropertyGroup
  Returns true if: 1) the PropertGroup:s have the same name, 2) all Property:s (including PropertyGroup:s) have the same name and are in the same order, and the Property:s have the same values.
equals(Object) - Method in class mro.util.UniqueIdentifier
  Compares two UniqueIdentifiers.
evalGrouping - Variable in class infomat.evaluation.Evaluation
evalGrouping - Variable in class infomat.evaluation.ExtrinsicEvaluation
evalGrouping - Variable in class infomat.evaluation.ExtrinsicGroupEvaluation
evalGrouping - Variable in class infomat.evaluation.IntrinsicEvaluation
evalGrouping - Variable in class infomat.evaluation.MatrixMeasures
evalGroupingDesignation - Static variable in class infomat.evaluation.Evaluation
evalGroupingDesignation - Variable in class infomat.evaluation.MatrixMeasures
evaluate(PropertiesPool, IMatrix, IObjectGrouping, IObjectGrouping, SparseISimilarity, String, long) - Static method in class infomat.Clusterer
Evaluation - Class in infomat.evaluation
  For calculating quality measures.
Evaluation(IMatrix, IObjectGrouping, IObjectGrouping, ISimilarity, String) - Constructor for class infomat.evaluation.Evaluation
Evaluation(IMatrix, IObjectGrouping, ISimilarity, String) - Constructor for class infomat.evaluation.Evaluation
evaluation() - Method in class infomat.view.InfomatModel
EVALUATION - Static variable in class infomat.view.menu.Menu
evaluationFrame - Variable in class infomat.view.InfomatModel
EvaluationFrame - Class in infomat.view.tools
  For evaluation in the GUI.
EvaluationFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.tools.EvaluationFrame
EvaluationFrame.EvaluationPanel - Class in infomat.view.tools
EvaluationFrame.EvaluationPanel(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.tools.EvaluationFrame.EvaluationPanel
EvaluationSelectionPanel - Class in infomat.view.evaluation
  Displayer of info.
EvaluationSelectionPanel(InfomatView, String) - Constructor for class infomat.view.evaluation.EvaluationSelectionPanel
evaluationSelectionPanel1 - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
evaluationSelectionPanel2 - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
ExampleClusterer - Class in infomat
  Simple class for running clustering without the GUI.
ExampleClusterer() - Constructor for class infomat.ExampleClusterer
EXIT - Static variable in class infomat.view.menu.Menu
exit() - Method in class infomat.view.picture.Guide
Experimentator - Class in infomat
  Class for running clustering experiments.
Experimentator(File) - Constructor for class infomat.Experimentator
Experimentator - Class in infomat.mro
  NOT WORKING IN VERSION 080828 Class for running clustering tasks without the GUI.
Experimentator() - Constructor for class infomat.mro.Experimentator
ExperimentatorNumberOfWords - Class in infomat.mro
  NOT WORKING IN VERSION 080828 Class for running clustering tasks without the GUI.
ExperimentatorNumberOfWords() - Constructor for class infomat.mro.ExperimentatorNumberOfWords
ExperimentatorReductionReduction - Class in infomat.mro
  NOT WORKING IN VERSION 080828 Class for running clustering tasks without the GUI.
ExperimentatorReductionReduction() - Constructor for class infomat.mro.ExperimentatorReductionReduction
ExperimentResultGenerator - Class in infomat.mro
  NOT WORKING IN VERSION 080828 Class for summing up an experiment.
ExperimentResultGenerator() - Constructor for class infomat.mro.ExperimentResultGenerator
ExperimentResultGenerator - Class in mro.util.experimentation
  Class for summing up an experiment.
ExperimentResultGenerator() - Constructor for class mro.util.experimentation.ExperimentResultGenerator
ExperimentResultGenerator.Info - Class in infomat.mro
  Private class for storing info for each directory.
ExperimentResultGenerator.Info(Measures, PropertiesPool) - Constructor for class infomat.mro.ExperimentResultGenerator.Info
ExperimentResultGenerator.InfoPool - Class in infomat.mro
  Private class for storing info for each directory.
ExperimentResultGenerator.InfoPool() - Constructor for class infomat.mro.ExperimentResultGenerator.InfoPool
exportPropertiesFileName - Variable in class infomat.io.textresult.IObjectGroupingTextResult
exportText() - Method in class infomat.view.InfomatModel
EXPORTTEXT - Static variable in class infomat.view.menu.Menu
exportTextFrame - Variable in class infomat.view.InfomatModel
ExportTextFrame - Class in infomat.view.tools
ExportTextFrame(IMatrix, InfomatModel, MainWindow) - Constructor for class infomat.view.tools.ExportTextFrame
ExtrinsicEvaluation - Class in infomat.evaluation
  For calculating extrinsic quality measures.
ExtrinsicEvaluation(IObjectGrouping, IObjectGrouping, String) - Constructor for class infomat.evaluation.ExtrinsicEvaluation
ExtrinsicGroupEvaluation - Class in infomat.evaluation
  For calculating extrinsic quality measures per IObjectGroup.
ExtrinsicGroupEvaluation(IObjectGrouping, IObjectGrouping) - Constructor for class infomat.evaluation.ExtrinsicGroupEvaluation
ExtrinsicGroupEvaluation(DoubleHashMap, IObjectGrouping, IObjectGrouping) - Constructor for class infomat.evaluation.ExtrinsicGroupEvaluation

## F

fClass - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
file - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
FILE - Static variable in class infomat.view.menu.Menu
fileable - Variable in class infomat.view.vector.IVectorPanel
fileable - Variable in class mro.util.measures.dialog.MeasuresPanel
fileChooser - Variable in class infomat.view.algorithms.MatrixFilterFrame
fileChooser - Variable in class infomat.view.algorithms.MatrixWeightingFrame
fileChooser - Variable in class infomat.view.grouping.settings.GroupingFilePanel
fileChooser - Variable in class infomat.view.menu.Menu
fileChooser - Variable in class infomat.view.tools.ExportTextFrame
fileChooser - Variable in class infomat.view.tools.StoplistFrame
fileChooser - Variable in class infomat.view.vector.IVectorPanel
fileChooser - Variable in class mro.util.measures.dialog.MeasuresPanel
fileChooser - Variable in class mro.util.properties.dialog.PropertiesPanel
fileChooserPath - Variable in class infomat.view.grouping.settings.GroupingFilePanel
fileChooserPath - Variable in class infomat.view.menu.Menu
fileChooserPath - Variable in class infomat.view.tools.StoplistFrame
fileChooserPath - Variable in class infomat.view.vector.IVectorPanel
fileChooserPath - Variable in class mro.util.measures.dialog.MeasuresPanel
fileChooserPath - Variable in class mro.util.properties.dialog.PropertiesPanel
FileConverter - Class in infomat.mro
  Class for converting Infomat file types.
FileConverter() - Constructor for class infomat.mro.FileConverter
fileName - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
filePanel - Variable in class mro.util.measures.dialog.MeasuresPanel
filePanel - Variable in class mro.util.properties.dialog.PropertiesPanel
filePath - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
fileType - Variable in class infomat.view.vector.IVectorPanel
FileViewer - Class in infomat.view.util
FileViewer(String) - Constructor for class infomat.view.util.FileViewer
FILEVIEWER_PREFERRED_SIZE - Variable in class infomat.view.util.FileViewer
fillSparsePicture(SparsePicture) - Static method in class infomat.view.picture.SparsePictureConstructor
filter(PropertiesPool, IMatrix) - Static method in class infomat.Clusterer
filter() - Method in class infomat.mro.Experimentator
filter() - Method in class infomat.mro.ExperimentatorNumberOfWords
filter() - Method in class infomat.mro.ExperimentatorReductionReduction
filter(IMatrix) - Method in class infomat.vectorspace.IMatrixCellFilter
filterMatrix() - Method in class infomat.view.InfomatModel
FILTERMATRIX - Static variable in class infomat.view.menu.Menu
findMinAndMaxInPixelVectorPart(Vector<SparsePixel>) - Method in class infomat.view.picture.SparsePicture
first - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
firstIndexOrderVector - Variable in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
firstIndexSet - Variable in class mro.util.doublehashmap.DoubleHashMap
firstIndexSet - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
firstMap - Variable in class mro.util.doublehashmap.DoubleHashMap
firstMap - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
fixFileName(String) - Method in class infomat.io.textresult.IObjectGroupingTextResult
fixFileName(String) - Method in class mro.util.properties.Properties
  IO
fixMove(int, int, int, int) - Method in class infomat.view.InfomatView
fixPath(String) - Method in class infomat.mro.Experimentator
fixPath(String) - Method in class infomat.mro.ExperimentatorNumberOfWords
fixPath(String) - Method in class infomat.mro.ExperimentatorReductionReduction
fixSize() - Method in class infomat.view.util.AlternatingButton
forceChange - Variable in class infomat.view.InfomatOverview
forceChange() - Method in class infomat.view.InfomatOverview
forceChange - Variable in class infomat.view.InfomatView
forceChange() - Method in class infomat.view.InfomatView
foundGW - Variable in class infomat.io.IMatrixIO.IMatrixHandler
foundLW - Variable in class infomat.io.IMatrixIO.IMatrixHandler
frame - Variable in class infomat.view.MainWindow
freq - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
freq - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
fromIOToStrings - Variable in class infomat.view.tools.StoplistFrame
fromStringsToIO - Variable in class infomat.view.tools.StoplistFrame
fw - Static variable in class infomat.view.vector.IVectorIndexPanel

## G

g - Variable in class infomat.view.picture.Guide
gatheredB - Variable in class infomat.view.pixel.PixelFrame.ControlPanel
gatheredPixelPanel - Variable in class infomat.view.pixel.PixelFrame
gatherPanel - Variable in class infomat.view.pixel.PixelFrame
gbc - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
gbc - Variable in class infomat.view.sorter.SorterPanel
GenericDoubleHashMap<F,S,V> - Class in mro.util.doublehashmap
  A DoubleHashMap has two indexes.
GenericDoubleHashMap() - Constructor for class mro.util.doublehashmap.GenericDoubleHashMap
  Constructor.
GenericDoubleHashMap(Class<F>, Class<S>, Class<V>) - Constructor for class mro.util.doublehashmap.GenericDoubleHashMap
  Constructor.
GenericDoubleHashMap(GenericDoubleHashMap<F, S, V>) - Constructor for class mro.util.doublehashmap.GenericDoubleHashMap
GenericOrderedDoubleHashMap<F,S,V> - Class in mro.util.doublehashmap
  A DoubleHashMap has two indexes.
GenericOrderedDoubleHashMap() - Constructor for class mro.util.doublehashmap.GenericOrderedDoubleHashMap
GenericOrderedDoubleHashMap(Class<F>, Class<S>, Class<V>) - Constructor for class mro.util.doublehashmap.GenericOrderedDoubleHashMap
  Constructor.
GenericOrderedDoubleHashMap(GenericOrderedDoubleHashMap<F, S, V>) - Constructor for class mro.util.doublehashmap.GenericOrderedDoubleHashMap
GenericOrderedDoubleHashMap(GenericDoubleHashMap<F, S, V>) - Constructor for class mro.util.doublehashmap.GenericOrderedDoubleHashMap
get(Object, Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Returns the Object that was indexed with "first" and "second".
get(F, S) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Returns the Object that was indexed with "first" and "second".
get(String) - Method in class mro.util.experimentation.MeasureAbbreviationTable
getAlgorithm(PropertiesPool, IMatrix, SparseISimilarity) - Static method in class infomat.Clusterer
getAlgorithmName() - Method in class infomat.algorithms.grouping.BisectingKMeans
getAlgorithmName() - Method in class infomat.algorithms.grouping.GroupingAlgorithm
getAlgorithmName() - Method in class infomat.algorithms.grouping.IVectorCategorizer
getAlgorithmName() - Method in class infomat.algorithms.grouping.KMeans
getAlgorithmName() - Method in class infomat.algorithms.grouping.LocationGrouper
getAlgorithmName() - Method in class infomat.algorithms.grouping.RandomClusterer
getAlgorithmName() - Method in class infomat.algorithms.grouping.RelativeClusterer
getAlgorithmName() - Method in class infomat.algorithms.grouping.TopDownSplitter
getAlgorithms(PropertiesPool, IMatrix, SparseISimilarity) - Static method in class infomat.Clusterer
getAlgorithms() - Method in class infomat.mro.Experimentator
getAlgorithms() - Method in class infomat.mro.ExperimentatorNumberOfWords
getAlgorithms() - Method in class infomat.mro.ExperimentatorReductionReduction
getAllCells() - Method in class infomat.vectorspace.IMatrix
  Returns the DoubleHashMap containing all non zero elements of the IMatrix.
getAllColumnColorPixelsInPartPictures() - Method in class infomat.view.picture.SparsePicture
getAllFileTypes() - Method in class infomat.mro.FileConverter
getAllIMatrixCells() - Method in class infomat.view.picture.SparsePixel
getAllPathsWithCommonPath() - Method in class mro.util.experimentation.PathTable
getAllPixelsInPartPictures() - Method in class infomat.view.picture.SparsePicture
getAllValueDescriptions() - Method in class mro.util.properties.Property
getAmbiguous() - Method in class infomat.vectorspace.IObject
getAmbiguousString() - Method in class infomat.vectorspace.IObject
getApplyButton() - Method in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
getAppropriateValueDescription(String) - Method in class mro.util.properties.Properties
getAppropriateValueDescription() - Method in class mro.util.properties.Property
getAverageMeasureVector() - Method in class mro.util.measures.AverageMeasureGroup
getBackgroundColor() - Static method in class infomat.view.grouping.settings.GroupingColoring
getBackgroundColor() - Method in class infomat.view.picture.SparsePartPicture
getBorderColor() - Method in class infomat.view.picture.SparsePartPicture
getBottomIObjectGrouping() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
getBottomIObjectGroupNodes() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
getButton() - Method in class infomat.view.evaluation.EvaluationSelectionPanel
getButton() - Method in class infomat.view.grouping.GroupingSelectionPanel
getCalculationButton() - Method in class infomat.view.sorter.SorterPanel.SorterMethodPanel
getCaption() - Method in class mro.util.experimentation.ResultTableStructure
getCell(IObject, IObject) - Method in class infomat.vectorspace.IMatrix
  Returns the IMatrixCell for the IObject "row" in the "row" IObjectSet and the IObject "col" in the "column" IObjectSet
getCellMap() - Method in class infomat.vectorspace.IMatrix
  Returns the DoubleHashMap containing all non zero elements of the IMatrix.
getCells() - Method in class infomat.view.pixel.PixelPanel
getCellsWith(IObject) - Method in class infomat.vectorspace.IMatrix
  Returns a Vector of all the IMatrixCells that contains the given IObject.
getCellsWithIObjectRestrictedToGroup(IObject, IObjectGroup) - Method in class infomat.vectorspace.IMatrix
  Returns a Vector of the IMatrixCell:s that contains the given IObject AND any of the IObjects in the restrictionGroup.
getChildren() - Method in class infomat.vectorspace.IObjectGroupNode
getChoiceComboBox() - Method in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
getClassName() - Static method in class mro.util.CurrentClassGetter
getClicksGrouping(IMatrix, float) - Method in class infomat.mro.synlex.SynlexGrouper
getClicksHashSets(IMatrix, float) - Method in class infomat.mro.synlex.SynlexGrouper
getClosestColumnIObject(int) - Method in class infomat.view.picture.SparsePartPicture
getClosestColumnIObject(int) - Method in class infomat.view.picture.SparsePicture
getClosestRowIObject(int) - Method in class infomat.view.picture.SparsePartPicture
getClosestRowIObject(int) - Method in class infomat.view.picture.SparsePicture
getClosestXPixelForColumn(int) - Method in class infomat.view.picture.SparsePartPicture
  Returns the closest x coordinate in the picture for a column in the IMatrix.
getClosestXPixelForColumn(int) - Method in class infomat.view.picture.SparsePicture
getClosestYPixelForRow(int) - Method in class infomat.view.picture.SparsePartPicture
getClosestYPixelForRow(int) - Method in class infomat.view.picture.SparsePicture
getColFrom() - Method in class infomat.view.InfomatView
getColFrom() - Method in class infomat.view.picture.SparsePartPicture
getColFrom() - Method in class infomat.view.picture.SparsePicture
getColor(Color) - Method in class infomat.view.picture.SparsePixel
getColorForGroup(IObjectGroup) - Method in class infomat.view.grouping.settings.GroupingColoring
getColorForObject(IObject) - Method in class infomat.view.grouping.settings.GroupingColoring
getColoring() - Method in class infomat.view.grouping.settings.GroupingSettings
getColoringForGrouping(IObjectGrouping) - Method in class infomat.view.grouping.settings.GroupingSettingsManager
getColTo() - Method in class infomat.view.InfomatView
getColTo() - Method in class infomat.view.picture.SparsePartPicture
getColTo() - Method in class infomat.view.picture.SparsePicture
getColumnColorMap() - Method in class infomat.view.picture.SparsePartPicture
getColumnColorPixel(int) - Method in class infomat.view.picture.SparsePartPicture
getColumnColorPixels() - Method in class infomat.view.picture.SparsePartPicture
getColumnDimensionName() - Method in class infomat.view.InfomatView
getColumnGrid() - Method in class infomat.view.InfomatView
getColumnGroup() - Method in class infomat.view.picture.SparsePartPicture
getColumnGroup() - Method in class infomat.view.picture.SparsePicture
getColumnGroupingManager() - Method in class infomat.view.InfomatView
getColumnIMatrixCellsForRowObject(IObject) - Method in class infomat.vectorspace.IMatrix
getColumnIObject() - Method in class infomat.vectorspace.IMatrixCell
getColumnIObjects(int) - Method in class infomat.view.picture.SparsePartPicture
getColumnIObjects(int) - Method in class infomat.view.picture.SparsePicture
getColumnIObjectSet() - Method in class infomat.vectorspace.IMatrix
  Returns the "column" IObjectSet.
getColumnPartPictureNumberForColumnIndex(int) - Method in class infomat.view.picture.SparsePicture
getColumnRelativeVector() - Method in class mro.util.experimentation.RelativeTable
getColumnRowRelativeVector() - Method in class mro.util.experimentation.RelativeTable
getColumns() - Method in class infomat.view.pixel.PixelPanel
getColumnTitles() - Method in class mro.util.experimentation.ResultTableStructure
getComboBox() - Method in class infomat.view.evaluation.EvaluationSelectionPanel
getComboBox() - Method in class infomat.view.grouping.GroupingSelectionPanel
getComboBox() - Method in class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
getComboBox() - Method in class infomat.view.sorter.SorterPanel.SortingChoicePanel
getCommonPath() - Method in class mro.util.experimentation.PathTable
getCommonPath() - Method in class mro.util.experimentation.ResultTableStructure
getConnectedComponentsGrouping(IMatrix, float) - Method in class infomat.mro.synlex.SynlexGrouper
getConnectedComponentsHashSets(IMatrix, float) - Method in class infomat.mro.synlex.SynlexGrouper
getCurrentClassName() - Method in class mro.util.CurrentClassGetter
getCurrentColoring() - Method in class infomat.view.grouping.settings.GroupingSettingsManager
getCurrentColumnGrouping() - Method in class infomat.vectorspace.IMatrix
  Returns the current IObjectGrouping for the columns.
getCurrentGrouping() - Method in class infomat.vectorspace.IObjectSet
  Returns the current IObjectGrouping.
getCurrentGrouping() - Method in class infomat.view.evaluation.EvaluationSelectionPanel
getCurrentGrouping() - Method in class infomat.view.grouping.settings.GroupingSettingsManager
getCurrentGrouping(boolean) - Method in class infomat.view.InfomatModel
getCurrentGrouping() - Method in class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
getCurrentGrouping() - Method in class infomat.view.sorter.SorterPanel
getCurrentRowGrouping() - Method in class infomat.vectorspace.IMatrix
  Returns the current IObjectGrouping for the rows.
getCurrentSize() - Method in class infomat.vectorspace.IMatrix
  Returns a Dimension with x-size as the number of "columns" and y-size as the number of "rows" of the IMatrix.
getDefaultButton() - Method in class mro.util.properties.dialog.PropertiesPanel.FilePanel
getDefaultProperties() - Method in class infomat.algorithms.grouping.BisectingKMeans
getDefaultProperties() - Method in class infomat.algorithms.grouping.GroupMerger
getDefaultProperties() - Method in class infomat.algorithms.grouping.IVectorCategorizer
getDefaultProperties() - Method in class infomat.algorithms.grouping.KMeans
getDefaultProperties() - Method in class infomat.algorithms.grouping.LocationGrouper
getDefaultProperties() - Method in class infomat.algorithms.grouping.RandomClusterer
getDefaultProperties() - Method in class infomat.algorithms.grouping.RelativeClusterer
getDefaultProperties() - Method in class infomat.algorithms.grouping.TopDownSplitter
getDefaultProperties() - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
getDefaultProperties() - Method in class infomat.algorithms.labeling.CentroidLabeler
getDefaultProperties() - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
getDefaultProperties() - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
getDefaultProperties() - Method in class infomat.algorithms.labeling.LabelReducer
getDefaultProperties() - Method in class infomat.algorithms.labeling.RelativeLabeler
getDefaultProperties() - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
getDefaultProperties() - Method in class infomat.algorithms.reduction.SizeReducer
getDefaultProperties() - Method in class infomat.bridges.jsdm.JSDMSimilarity
getDefaultProperties() - Method in class infomat.bridges.jsdm.JSDMWrapper
getDefaultProperties() - Method in class infomat.bridges.jsdm.RIIO
getDefaultProperties() - Method in class infomat.Clusterer
getDefaultProperties() - Method in class infomat.evaluation.Evaluation
getDefaultProperties() - Method in class infomat.evaluation.ExtrinsicEvaluation
getDefaultProperties() - Method in class infomat.evaluation.IntrinsicEvaluation
getDefaultProperties() - Method in class infomat.evaluation.MatrixMeasures
getDefaultProperties() - Method in class infomat.Experimentator
getDefaultProperties() - Method in class infomat.io.IObjectGroupingIO
getDefaultProperties() - Method in class infomat.io.textresult.IObjectGroupingTextResult
getDefaultProperties() - Method in class infomat.io.textresult.IObjectGroupTextResult
getDefaultProperties() - Method in class infomat.mro.Experimentator
getDefaultProperties() - Method in class infomat.mro.ExperimentatorNumberOfWords
getDefaultProperties() - Method in class infomat.mro.ExperimentatorReductionReduction
getDefaultProperties() - Method in class infomat.mro.ExperimentResultGenerator
getDefaultProperties() - Method in class infomat.mro.FileConverter
getDefaultProperties() - Method in class infomat.vectorspace.IMatrixCellFilter
getDefaultProperties() - Method in class infomat.vectorspace.Normalizer
getDefaultProperties() - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getDefaultProperties() - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
getDefaultProperties() - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getDefaultProperties() - Method in class infomat.vectorspace.Stoplist
getDefaultProperties() - Method in class infomat.vectorspace.weighting.CountWeighter
getDefaultProperties() - Method in class infomat.vectorspace.weighting.TFIDFWeighter
getDefaultProperties() - Method in class infomat.vectorspace.weighting.TFWeighter
getDefaultProperties() - Method in class infomat.view.InfomatModel
getDefaultProperties() - Method in class mro.util.experimentation.ExperimentResultGenerator
getDefaultProperties() - Method in class mro.util.properties.dialog.DummyClass
getDefaultProperties() - Method in interface mro.util.properties.HasProperties
getDescription() - Method in class mro.util.measures.Measure
getDescription() - Method in class mro.util.properties.Property
getDTDElementName() - Method in class mro.util.UniqueIdentifier
  Returns a String with the name of the element defining a UniqueIdentifier in a DTD.
getExportPropertiesFileName() - Method in class infomat.io.textresult.IObjectGroupingTextResult
getFallbackProperties() - Method in class infomat.view.InfomatModel
getFirstIndexOrderVector() - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
getForgroundColor() - Static method in class infomat.view.grouping.settings.GroupingColoring
getGenericOrderedDoubleHashMap() - Method in class mro.util.experimentation.PathTable
getGenericOrderedDoubleHashMap(boolean, Vector<Vector<T>>) - Static method in class mro.util.experimentation.ResultTable
getGenericOrderedDoubleHashMap() - Method in class mro.util.experimentation.Table
getGlobalWeight(IObject) - Method in class infomat.vectorspace.IMatrix
  Returns 0 if the IObject has not been weighted.
getGridChanged() - Method in class infomat.view.InfomatView
getGridColor() - Method in class infomat.view.picture.SparsePicture
getGridSize() - Static method in class infomat.view.picture.SparsePicture
getGridX() - Method in class infomat.view.picture.SparsePartPicture
getGridY() - Method in class infomat.view.picture.SparsePartPicture
getGroup() - Method in class infomat.view.group.GroupFrame
getGroupEntropyMap() - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
getGroupFrameManager() - Method in class infomat.view.InfomatView
getGroupGroupingSimilarityMap(Vector<IObjectGroup>, IObjectGrouping) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
getGrouping() - Method in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
getGrouping() - Method in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
getGroupingFromSetSet(HashSet<HashSet<IObject>>, float) - Method in class infomat.mro.synlex.SynlexGrouper
getGroupingManager(boolean) - Method in class infomat.view.InfomatView
getGroupings() - Method in class infomat.vectorspace.IObjectSet
  Returns all IObjectGrouping:s of this IObjectSet.
getGroupingVector() - Method in class infomat.vectorspace.IObjectGrouping
  Returns a vector of all the IObjects contained in this IObjectGrouping in the order suggested by the ordering of the IObjectGroup:s and their internal order.
getGroupingWithName(String) - Method in class infomat.vectorspace.IObjectSet
  Returns the IObjectGrouping with the name given.
getGroupLimitsForIntervall(int, int) - Method in class infomat.vectorspace.IObjectGrouping
  Returns a vector with integers that indicate where the boundaries for the IObjectsGroups are in the entire ordered vector "groupOrdered".
getGroupMeasureMap() - Method in class infomat.view.sorter.SorterPanel
getGroupNormEntropyMap() - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
getGroupPartPurity(IObjectGroup, IObjectGrouping, float[]) - Static method in class infomat.evaluation.ExtrinsicGroupEvaluation
  partSplitValues should contain ordered values between 0 and 1 representing subparts of the entire group.
getGroupPartPurityMap(IObjectGrouping, IObjectGrouping, float[]) - Static method in class infomat.evaluation.ExtrinsicGroupEvaluation
getGroupPurity(IObjectGroup, IObjectGrouping) - Static method in class infomat.evaluation.ExtrinsicGroupEvaluation
getGroupPurityMap() - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
getGroupRepresentation(IObjectGroup) - Method in class infomat.bridges.jsdm.JSDMSimilarity
getGroupRepresentation(IObjectGroup) - Method in class infomat.vectorspace.similarity.DenseISimilarity
getGroupRepresentation(IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getGroupRepresentation(IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseISimilarity
getGroupRepresentation(IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
getGroupRepresentation(IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getGroups() - Method in class infomat.vectorspace.IObjectGrouping
  Returns the ordered IObjectGroup:s in a vector.
getGroupsForIntervall(int, int) - Method in class infomat.vectorspace.IObjectGrouping
  Returns a vector of IObjectGroups that lie within the intervall given.
getGuide() - Method in class infomat.view.picture.SparsePicture
getHardGrouping() - Method in class infomat.vectorspace.SoftIObjectGrouping
getIconPath() - Method in class infomat.view.menu.ToolbarView
getID() - Method in class infomat.vectorspace.IObject
getImage() - Method in class infomat.view.picture.SparsePartPicture
getImageHeight() - Method in class infomat.view.picture.SparsePartPicture
getImagePixels(int, int, int, int) - Static method in class infomat.view.picture.SparsePictureConstructor
getImageSize() - Method in class infomat.view.picture.SparsePartPicture
getImageWidth() - Method in class infomat.view.picture.SparsePartPicture
getIMatrix() - Method in interface infomat.algorithms.grouping.NeedsIMatrix
  Returns the actual IMatrix.
getIMatrix() - Method in class infomat.algorithms.grouping.RelativeClusterer
getIMatrix() - Method in class infomat.io.TextWordIMatrixConstructor
getIMatrix() - Method in class infomat.mro.synlex.SynlexIO.SynlexHandler
getIMatrix() - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getIMatrix() - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getIMatrix() - Method in class infomat.view.InfomatModel
getIMatrixCellWithHighestWeight() - Method in class infomat.view.picture.SparsePixel
getIMatrixDimension() - Method in interface infomat.algorithms.grouping.NeedsIMatrixDimension
  Returns a boolean that indicates wether the algorithm should consider rows or columns of a matrix.
getIMatrixDimension() - Method in class infomat.algorithms.grouping.RelativeClusterer
getIMatrixDimension() - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getIMatrixDimension() - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getIMatrixPartHeight() - Method in class infomat.view.picture.SparsePartPicture
getIMatrixPartSize() - Method in class infomat.view.picture.SparsePartPicture
getIMatrixPartWidth() - Method in class infomat.view.picture.SparsePartPicture
getInfomatModel() - Method in class infomat.view.InfomatView
getInfomatView() - Method in class infomat.view.SessionPanel
getInfoString() - Method in class infomat.algorithms.grouping.BisectingKMeans
getInfoString() - Method in class infomat.algorithms.grouping.GroupingAlgorithm
getInfoString() - Method in class infomat.algorithms.grouping.GroupMerger
getInfoString() - Method in class infomat.algorithms.grouping.IVectorCategorizer
getInfoString() - Method in class infomat.algorithms.grouping.KMeans
getInfoString() - Method in class infomat.algorithms.grouping.LocationGrouper
getInfoString() - Method in class infomat.algorithms.grouping.RandomClusterer
getInfoString() - Method in class infomat.algorithms.grouping.RelativeClusterer
getInfoString() - Method in class infomat.algorithms.grouping.TopDownSplitter
getInfoVector() - Method in class infomat.mro.ExperimentResultGenerator.InfoPool
getIObject(String) - Method in class infomat.mro.synlex.SynlexIO.SynlexHandler
getIObjectAt(int) - Method in class infomat.vectorspace.IObjectGroup
  Returns the IObject at the i:the place according to the ordering.
getIObjectGroup() - Method in class infomat.vectorspace.IObjectGroupNode
getIObjectGrouping() - Method in class infomat.view.grouping.settings.GroupingColoring
getIObjectGroupNotSavedFileName() - Method in class infomat.io.textresult.IObjectGroupingTextResult
getIObjectNotSavedFileName() - Method in class infomat.io.textresult.IObjectGroupingTextResult
getIObjectOrderIndex(IObject) - Method in class infomat.vectorspace.IObjectGroup
  Returns the order number of the IObject.
getIObjectWithId(int) - Method in class infomat.vectorspace.IObjectSet
  Returns the IObject with the given id.
getISimilarity(boolean) - Method in class infomat.view.InfomatModel
getISimilarity(boolean) - Method in class infomat.view.similarity.SimilarityFrame
getIVector() - Method in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
getIVector() - Method in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
getIVector() - Method in class infomat.vectorspace.IObjectGroup
getIVector() - Method in class infomat.view.vector.IVectorPanel
getIVectorIndex() - Method in class infomat.view.vector.IVectorIndexPanel
getKind() - Method in class infomat.vectorspace.IObject
getKind() - Method in class mro.util.properties.Property
  Returns an int telling what kind of value.
getLabelString() - Method in class infomat.vectorspace.ILabel
getLargeImage() - Method in class infomat.view.picture.SparsePartPicture
getLargestCommonLocation() - Static method in class infomat.vectorspace.IObject
  Returns the representation in the form of a HashMap, mapping IObject to a Float value.
getLargestCommonPath() - Method in class mro.util.CommonPath
getLargestStartOfLocation() - Method in class infomat.vectorspace.IObjectSet
getLastColumnIObject(int) - Method in class infomat.view.picture.SparsePartPicture
getLastColumnIObject(int) - Method in class infomat.view.picture.SparsePicture
getLastRowIObject(int) - Method in class infomat.view.picture.SparsePartPicture
getLastRowIObject(int) - Method in class infomat.view.picture.SparsePicture
getLoadButton() - Method in class mro.util.measures.dialog.MeasuresPanel.FilePanel
getLoadButton() - Method in class mro.util.properties.dialog.PropertiesPanel.FilePanel
getLocalCount() - Method in class infomat.vectorspace.IMatrixCell
getLocalWeight() - Method in class infomat.vectorspace.IMatrixCell
getLocation() - Method in class infomat.vectorspace.IMatrixCell
getLocation() - Method in class infomat.vectorspace.IObject
getLocation() - Method in interface infomat.vectorspace.vector.IVectorIndex
getLocation() - Method in class infomat.vectorspace.vector.IVectorString
getMainFrame() - Method in class infomat.view.MainWindow
  Get the sessionFrame that is in MainWindow
getMainWindow() - Method in class infomat.view.InfomatModel
getMap() - Method in class infomat.vectorspace.vector.IVector
  Returns the actual map.
getMaxOpacity() - Method in class infomat.view.grouping.settings.GroupingSettings
getMeasure(String) - Method in class mro.util.measures.MeasureGroup
  Returns a `Measure` with the specified name.
getMeasureAbbreviation() - Method in class mro.util.experimentation.PathEntry
getMeasureAbbreviationTable() - Method in class mro.util.experimentation.ResultTableStructure
getMeasureBorderColor() - Method in class mro.util.measures.dialog.MeasuresPanel
getMeasureGroup(String) - Method in class mro.util.measures.MeasureGroup
  Returns a `MeasureGroup` with the specified name.
getMeasureName() - Method in class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
getmeasures() - Method in class mro.util.measures.MeasuresHandler
getMeasures() - Method in class mro.util.measures.MultiMeasure
getMeasuresForPath(String) - Method in class infomat.mro.ExperimentResultGenerator.InfoPool
getMeasuresForPath(String) - Method in class mro.util.experimentation.ResultPool
getMeasureVector() - Method in class mro.util.measures.MeasureGroup
  Sets a Measure with the given name to the given value.
getMinOpacity() - Method in class infomat.view.grouping.settings.GroupingSettings
getMouseState() - Method in class infomat.view.InfomatView
getName() - Method in class infomat.bridges.jsdm.JSDMSimilarity
getName() - Method in class infomat.vectorspace.IObjectGroup
  Returns the name of thie IObjectGroup.
getName() - Method in class infomat.vectorspace.similarity.ISimilarity
getName() - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getName() - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
getName() - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getName() - Method in class mro.util.measures.Measure
getName() - Method in class mro.util.measures.MeasureGroup
getName() - Method in class mro.util.properties.Property
getNewColorForGroup(IObjectGroup) - Method in class infomat.view.grouping.settings.GroupingColoring
getNumber() - Method in class mro.util.experimentation.RelativeEntry
getNumberOfIMatrixCells() - Method in class infomat.view.picture.SparsePixel
getObjectOrderValueMap() - Method in class infomat.vectorspace.IObjectGroup
  Returns a HashMap with the objects mapped to the values that are the basis for the ordering.
getOffsetX() - Method in class infomat.view.picture.SparsePartPicture
getOffsetY() - Method in class infomat.view.picture.SparsePartPicture
getOpacity() - Method in class infomat.view.picture.SparsePixel
getOrderable() - Method in class infomat.view.vector.IVectorPanel
getOrdered() - Method in class infomat.vectorspace.IObjectGroup
  Returns a vector of the ordered IObjects.
getOrderedVector() - Method in class infomat.vectorspace.vector.IVector
  Returns a vector of T:s, orderd by their value.
getOrderString() - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
getOriginalIVector() - Method in class infomat.view.vector.IVectorPanel
getOrigoX() - Method in class infomat.view.picture.SparsePartPicture
getOrigoY() - Method in class infomat.view.picture.SparsePartPicture
getOtherIObject(IObject) - Method in class infomat.vectorspace.IMatrixCell
getOtherIObjectsForIObject(IObject) - Method in class infomat.vectorspace.IMatrix
  Returns all IObject:s the specified IObject share a IMatrixCell with.
getOverview() - Method in class infomat.view.InfomatView
getOverviewPicture() - Method in class infomat.view.picture.SparsePicture
getOwnerClassName() - Method in class mro.util.properties.Properties
getOwnerClassName() - Method in class mro.util.UniqueIdentifier
  Returns the full name of the class of the owning object.
getOwnerIdentifier() - Method in class mro.util.properties.Properties
  Returns the owner identifier (a `UniqueIdentifier`).
getOwnerIdentifier() - Method in class mro.util.properties.PropertiesHandler
getParent() - Method in class infomat.vectorspace.IObjectGroupNode
getPartPictureArray() - Method in class infomat.view.picture.SparsePicture
getPathAndFileName(String) - Method in class mro.util.CommonPath
  Returns the path (index 0) and file name (1) parts from an entire file name.
getPathForInfo(ExperimentResultGenerator.Info) - Method in class infomat.mro.ExperimentResultGenerator.InfoPool
getPathForResult(Result) - Method in class mro.util.experimentation.ResultPool
getPaths() - Method in class mro.util.experimentation.PathEntry
getPathTable() - Method in class mro.util.experimentation.ResultTableStructure
getPixel(int, int) - Method in class infomat.view.picture.SparsePartPicture
getPixel(int, int) - Method in class infomat.view.picture.SparsePicture
getPixelForObjects(IObject, IObject) - Method in class infomat.view.picture.SparsePicture
getPixelFrame() - Method in class infomat.view.InfomatModel
getPixels() - Method in class infomat.view.picture.SparsePartPicture
getPlace() - Method in class mro.util.experimentation.RelativeEntry
getProperties() - Method in class infomat.algorithms.grouping.BisectingKMeans
getProperties() - Method in class infomat.algorithms.grouping.GroupMerger
getProperties() - Method in class infomat.algorithms.grouping.IVectorCategorizer
getProperties() - Method in class infomat.algorithms.grouping.KMeans
getProperties() - Method in class infomat.algorithms.grouping.LocationGrouper
getProperties() - Method in class infomat.algorithms.grouping.RandomClusterer
getProperties() - Method in class infomat.algorithms.grouping.RelativeClusterer
getProperties() - Method in class infomat.algorithms.grouping.TopDownSplitter
getProperties() - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
getProperties() - Method in class infomat.algorithms.labeling.CentroidLabeler
getProperties() - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
getProperties() - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
getProperties() - Method in class infomat.algorithms.labeling.LabelReducer
getProperties() - Method in class infomat.algorithms.labeling.RelativeLabeler
getProperties() - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
getProperties() - Method in class infomat.algorithms.reduction.SizeReducer
getProperties() - Method in class infomat.bridges.jsdm.JSDMSimilarity
getProperties() - Method in class infomat.bridges.jsdm.JSDMWrapper
getProperties() - Method in class infomat.bridges.jsdm.RIIO
getProperties() - Method in class infomat.Clusterer
getProperties() - Method in class infomat.evaluation.Evaluation
getProperties() - Method in class infomat.evaluation.ExtrinsicEvaluation
getProperties() - Method in class infomat.evaluation.IntrinsicEvaluation
getProperties() - Method in class infomat.evaluation.MatrixMeasures
getProperties() - Method in class infomat.Experimentator
getProperties() - Method in class infomat.io.IObjectGroupingIO
getProperties() - Method in class infomat.io.textresult.IObjectGroupingTextResult
getProperties() - Method in class infomat.io.textresult.IObjectGroupTextResult
getProperties() - Method in class infomat.mro.Experimentator
getProperties() - Method in class infomat.mro.ExperimentatorNumberOfWords
getProperties() - Method in class infomat.mro.ExperimentatorReductionReduction
getProperties() - Method in class infomat.mro.ExperimentResultGenerator
getProperties() - Method in class infomat.mro.FileConverter
getProperties() - Method in class infomat.vectorspace.IMatrixCellFilter
getProperties() - Method in class infomat.vectorspace.Normalizer
getProperties() - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getProperties() - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
getProperties() - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getProperties() - Method in class infomat.vectorspace.Stoplist
getProperties() - Method in class infomat.vectorspace.weighting.CountWeighter
getProperties() - Method in class infomat.vectorspace.weighting.TFIDFWeighter
getProperties() - Method in class infomat.vectorspace.weighting.TFWeighter
getProperties() - Method in class infomat.view.InfomatModel
getProperties() - Method in class mro.util.experimentation.ExperimentResultGenerator
getProperties() - Method in class mro.util.properties.dialog.DummyClass
getProperties() - Method in interface mro.util.properties.HasProperties
getProperties() - Method in class mro.util.properties.PropertiesHandler
getPropertiesForObject(Object) - Method in class mro.util.properties.PropertiesPool
  Returns the Properties stored for the class of the specified object.
getPropertiesName() - Method in class mro.util.properties.Properties
getPropertiesPoolForPath(String) - Method in class infomat.mro.ExperimentResultGenerator.InfoPool
getPropertiesPoolForPath(String) - Method in class mro.util.experimentation.ResultPool
getPropertiesWithClassName(String) - Method in class mro.util.properties.PropertiesPool
  Returns the Properties for the class with the given name, null if there is not any such Properties.
getPropertiesWithSuperClassName(String) - Method in class mro.util.properties.PropertiesPool
  Returns a Vector of Properties, with those Properties that store info on classes with the (by name) given super class.
getProperty(String) - Method in class mro.util.properties.Properties
  Returns a `Property` with the specified name.
getPropertyBorderColor() - Method in class mro.util.properties.dialog.PropertiesPanel
getPropertyGroup(String) - Method in class mro.util.properties.Properties
  Returns a `PropertyGroup` with the specified name.
getPropertyGroupName() - Method in class mro.util.properties.PropertyGroup
getPropertyValue(String) - Method in class infomat.algorithms.grouping.BisectingKMeans
getPropertyValue(String) - Method in class infomat.algorithms.grouping.GroupMerger
getPropertyValue(String) - Method in class infomat.algorithms.grouping.IVectorCategorizer
getPropertyValue(String) - Method in class infomat.algorithms.grouping.KMeans
getPropertyValue(String) - Method in class infomat.algorithms.grouping.LocationGrouper
getPropertyValue(String) - Method in class infomat.algorithms.grouping.RandomClusterer
getPropertyValue(String) - Method in class infomat.algorithms.grouping.RelativeClusterer
getPropertyValue(String) - Method in class infomat.algorithms.grouping.TopDownSplitter
getPropertyValue(String) - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
getPropertyValue(String) - Method in class infomat.algorithms.labeling.CentroidLabeler
getPropertyValue(String) - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
getPropertyValue(String) - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
getPropertyValue(String) - Method in class infomat.algorithms.labeling.LabelReducer
getPropertyValue(String) - Method in class infomat.algorithms.labeling.RelativeLabeler
getPropertyValue(String) - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
getPropertyValue(String) - Method in class infomat.algorithms.reduction.SizeReducer
getPropertyValue(String) - Method in class infomat.bridges.jsdm.JSDMSimilarity
getPropertyValue(String) - Method in class infomat.bridges.jsdm.JSDMWrapper
getPropertyValue(String) - Method in class infomat.bridges.jsdm.RIIO
getPropertyValue(String) - Method in class infomat.Clusterer
getPropertyValue(String) - Method in class infomat.evaluation.Evaluation
getPropertyValue(String) - Method in class infomat.evaluation.ExtrinsicEvaluation
getPropertyValue(String) - Method in class infomat.evaluation.IntrinsicEvaluation
getPropertyValue(String) - Method in class infomat.evaluation.MatrixMeasures
getPropertyValue(String) - Method in class infomat.Experimentator
getPropertyValue(String) - Method in class infomat.io.IObjectGroupingIO
getPropertyValue(String) - Method in class infomat.io.textresult.IObjectGroupingTextResult
getPropertyValue(String) - Method in class infomat.io.textresult.IObjectGroupTextResult
getPropertyValue(String) - Method in class infomat.mro.Experimentator
getPropertyValue(String) - Method in class infomat.mro.ExperimentatorNumberOfWords
getPropertyValue(String) - Method in class infomat.mro.ExperimentatorReductionReduction
getPropertyValue(String) - Method in class infomat.mro.ExperimentResultGenerator
getPropertyValue(String) - Method in class infomat.mro.FileConverter
getPropertyValue(String) - Method in class infomat.vectorspace.IMatrixCellFilter
getPropertyValue(String) - Method in class infomat.vectorspace.Normalizer
getPropertyValue(String) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getPropertyValue(String) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
getPropertyValue(String) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getPropertyValue(String) - Method in class infomat.vectorspace.Stoplist
getPropertyValue(String) - Method in class infomat.vectorspace.weighting.CountWeighter
getPropertyValue(String) - Method in class infomat.vectorspace.weighting.TFIDFWeighter
getPropertyValue(String) - Method in class infomat.vectorspace.weighting.TFWeighter
getPropertyValue(String) - Method in class infomat.view.InfomatModel
getPropertyValue(String) - Method in class mro.util.experimentation.ExperimentResultGenerator
getPropertyValue(String) - Method in class mro.util.properties.dialog.DummyClass
getPropertyValue(String) - Method in interface mro.util.properties.HasProperties
getPropertyValue(String) - Method in class mro.util.properties.Properties
getPropertyVector() - Method in class infomat.algorithms.grouping.BisectingKMeans
getPropertyVector() - Method in class infomat.algorithms.grouping.GroupingAlgorithm
getPropertyVector() - Method in class infomat.algorithms.grouping.GroupMerger
getPropertyVector() - Method in class infomat.algorithms.grouping.IVectorCategorizer
getPropertyVector() - Method in class infomat.algorithms.grouping.KMeans
getPropertyVector() - Method in class infomat.algorithms.grouping.LocationGrouper
getPropertyVector() - Method in class infomat.algorithms.grouping.RandomClusterer
getPropertyVector() - Method in class infomat.algorithms.grouping.RelativeClusterer
getPropertyVector() - Method in class infomat.algorithms.grouping.TopDownSplitter
getPropertyVector() - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
getPropertyVector() - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
getPropertyVector() - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
getPropertyVector() - Method in class infomat.vectorspace.Stoplist
getPropertyVector() - Method in class mro.util.properties.Properties
getPropertyVector() - Method in class mro.util.properties.PropertyGroup
getPropertyVector() - Method in interface mro.util.properties.PropertyInterface
getRelatedIdentifiers() - Method in class mro.util.properties.Properties
  Returns all related identifiers, a `Vector` of `UniqueIdentifier`:s.
getRelatedIdentifiers() - Method in class mro.util.properties.PropertiesHandler
getRelativeIObjectGroup() - Method in class mro.util.measures.Measure
getRelativeKind() - Method in class mro.util.experimentation.RelativeEntry
getRelativeNumber() - Method in class mro.util.experimentation.RelativeEntry
getRelativeTable() - Method in class mro.util.experimentation.ResultTableStructure
getRelativeVector() - Method in class mro.util.experimentation.RelativeTable
getRepresentation(IObject) - Method in class infomat.bridges.jsdm.JSDMSimilarity
getRepresentation(IObject) - Method in class infomat.bridges.jsdm.JSDMWrapper
getRepresentation(IObject) - Method in class infomat.vectorspace.similarity.DenseISimilarity
getRepresentation(IObject) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
  Returns the representation in the form of a IVector.
getRepresentation(IObject) - Method in class infomat.vectorspace.similarity.SparseISimilarity
getRepresentation(IObject) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
  Returns the representation in the form of a IVector.
getRepresentation(IObject) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
  Returns the representation in the form of a IVector.
getResultForPath(String) - Method in class mro.util.experimentation.ResultPool
getResultTableStructure() - Method in class mro.util.experimentation.ResultTableStructureHandler
getResultVector() - Method in class mro.util.experimentation.ResultPool
getRGB() - Method in class infomat.view.picture.SparsePixel
getRootIObjectGrouping() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
getRootIObjectGroupNodes() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
getRoundString() - Method in class mro.util.experimentation.PathEntry
getRowColumnRelativeVector() - Method in class mro.util.experimentation.RelativeTable
getRowDimensionName() - Method in class infomat.view.InfomatView
getRowFrom() - Method in class infomat.view.InfomatView
getRowFrom() - Method in class infomat.view.picture.SparsePartPicture
getRowFrom() - Method in class infomat.view.picture.SparsePicture
getRowGrid() - Method in class infomat.view.InfomatView
getRowGroup() - Method in class infomat.view.picture.SparsePartPicture
getRowGroup() - Method in class infomat.view.picture.SparsePicture
getRowGroupingManager() - Method in class infomat.view.InfomatView
getRowIMatrixCellsForColumnObject(IObject) - Method in class infomat.vectorspace.IMatrix
  Returns a Vector of the IMatrixCells that contains the given IObject.
getRowIObject() - Method in class infomat.vectorspace.IMatrixCell
getRowIObjects(int) - Method in class infomat.view.picture.SparsePartPicture
getRowIObjects(int) - Method in class infomat.view.picture.SparsePicture
getRowIObjectSet() - Method in class infomat.vectorspace.IMatrix
  Returns the "row" IObjectSet.
getRowRelativeVector() - Method in class mro.util.experimentation.RelativeTable
getRows() - Method in class infomat.view.pixel.PixelPanel
getRowsOrColumnsButton() - Method in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
getRowTitles() - Method in class mro.util.experimentation.ResultTableStructure
getRowTo() - Method in class infomat.view.InfomatView
getRowTo() - Method in class infomat.view.picture.SparsePartPicture
getRowTo() - Method in class infomat.view.picture.SparsePicture
getSaveButton() - Method in class mro.util.measures.dialog.MeasuresPanel.FilePanel
getSaveButton() - Method in class mro.util.properties.dialog.PropertiesPanel.FilePanel
getSecondIndexOrderVector() - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
getSelected() - Method in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
getSelected() - Method in class infomat.view.sorter.SorterPanel.SortingChoicePanel
getSelectedAlgorithm() - Method in class infomat.view.algorithms.AlgorithmSelectionPanel
getSelectedGrouping() - Method in class infomat.view.evaluation.EvaluationSelectionPanel
getSelectedGrouping() - Method in class infomat.view.grouping.GroupingSelectionPanel
getSelectedIVectorIndexes() - Method in class infomat.view.vector.IVectorPanel
getSelectedSimilarity() - Method in class infomat.view.similarity.SimilarityPanel
getSelectedWeighter() - Method in class infomat.view.algorithms.MatrixWeightingSelectionPanel
getSelectionState() - Method in class infomat.view.pixel.PixelFrame
getSelectWhat() - Method in class infomat.view.pixel.PixelFrame
getSelfSimilarityMap(Vector<IObjectGroup>) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
getSessionPanel() - Method in class infomat.view.MainWindow
  Get the frame that is in the MainWindows frame
getSetSetFromIOSetMap(HashMap<IObject, HashSet<IObject>>) - Method in class infomat.mro.synlex.SynlexGrouper
getSettingsForGrouping(IObjectGrouping) - Method in class infomat.view.grouping.settings.GroupingSettingsManager
getSimilarity() - Method in class infomat.algorithms.grouping.KMeans
getSimilarity(boolean) - Method in class infomat.view.similarity.SimilarityManager
getSimilarity() - Method in class infomat.view.vector.IVectorPanel
getSimilarityManager() - Method in class infomat.view.InfomatModel
getSimilarityManager() - Method in class infomat.view.similarity.SimilarityFrame
getSimilarityMeasures(PropertiesPool, IMatrix, boolean) - Static method in class infomat.Clusterer
getSize() - Method in class infomat.vectorspace.IMatrix
  Returns a Dimension with x-size as the number of "columns" and y-size as the number of "rows" of the IMatrix.
getSlider() - Method in class infomat.view.grouping.settings.OpacitySlider
getSortedGroupRepresentation(IObjectGroup, SparseISimilarity) - Method in class infomat.algorithms.labeling.Labeler
getSortedObjectOrderValueVector() - Method in class infomat.vectorspace.IObjectGroup
  Returns a sorted centroid vector
getSparsePicture() - Method in class infomat.view.InfomatOverview
getSparsePicture() - Method in class infomat.view.InfomatView
getStamp() - Method in class mro.util.measures.Measure
getSTD() - Method in class mro.util.measures.AverageMeasure
getSTD() - Method in class mro.util.measures.AverageMeasureGroup
getStd() - Method in class mro.util.properties.PropertyAverage
getStopIObjectsVector() - Method in class infomat.vectorspace.Stoplist
getStopStringsVector() - Method in class infomat.vectorspace.Stoplist
getString() - Method in class infomat.vectorspace.IMatrixCell
getString() - Method in class infomat.vectorspace.IObject
getString() - Method in interface infomat.vectorspace.vector.IVectorIndex
getString() - Method in class infomat.vectorspace.vector.IVectorString
getTable() - Method in class mro.util.experimentation.TableHandler
getThreadID() - Method in class mro.util.UniqueIdentifier
  Returns the ID of the Thread in which this UniqueIdentifier was created.
getTime() - Method in class mro.util.UniqueIdentifier
  Returns the time for the creation this UniqueIdentifier.
getToolbarController() - Method in class infomat.view.SessionPanel
getToolbarView() - Method in class infomat.view.InfomatView
getToolbarView() - Method in class infomat.view.SessionPanel
getTotalWeight(boolean, boolean) - Method in class infomat.vectorspace.IMatrix
  Returns the total weight for each object along the specified dimension.
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.BisectingKMeans
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.IVectorCategorizer
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.KMeans
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.LocationGrouper
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.RandomClusterer
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.RelativeClusterer
getUniqueIdentifier() - Method in class infomat.algorithms.grouping.TopDownSplitter
getUniqueIdentifier() - Method in interface mro.util.UniqueIdentifiable
getUnorderedVector() - Method in class infomat.vectorspace.vector.IVector
  Returns a vector of T:s, in no particular order.
getValue(T) - Method in class infomat.vectorspace.vector.IVector
  Returns the values for the specified T.
getValue() - Method in class mro.util.measures.AverageMeasure
getValue() - Method in class mro.util.measures.AverageMeasureGroup
getValue() - Method in class mro.util.measures.Measure
getValue() - Method in class mro.util.properties.Property
getValue() - Method in class mro.util.properties.PropertyValueDescription
getValueDescription() - Method in class mro.util.properties.PropertyValueDescription
getVectorVector(boolean, GenericOrderedDoubleHashMap<Integer, Integer, T>) - Static method in class mro.util.experimentation.ResultTable
getView() - Method in class infomat.view.picture.SparsePartPicture
getView() - Method in class infomat.view.picture.SparsePicture
getVisible() - Method in class infomat.view.info.PixelInfoFrame
getVisible() - Method in class infomat.view.InfomatOverview
getVisible() - Method in class infomat.view.pixel.PixelFrame
getWeight() - Method in class infomat.vectorspace.IMatrixCell
getWeight() - Method in class infomat.view.picture.SparsePixel
getWeighterName() - Method in class infomat.vectorspace.weighting.CountWeighter
getWeighterName() - Method in class infomat.vectorspace.weighting.TFIDFWeighter
getWeighterName() - Method in class infomat.vectorspace.weighting.TFWeighter
getWeighterName() - Method in class infomat.vectorspace.weighting.Weighter
  Returns a String that identifies the Weighter.
getWeighters(PropertiesPool) - Static method in class infomat.Clusterer
getWholeIObjectGroup() - Method in class infomat.bridges.jsdm.JSDMWrapper
getX() - Method in class infomat.view.picture.SparsePixel
getXLast() - Method in class infomat.view.picture.SparsePixel
getY() - Method in class infomat.view.picture.SparsePixel
getYLast() - Method in class infomat.view.picture.SparsePixel
getZoomInFactor() - Method in class infomat.view.InfomatView
getZoomOutFactor() - Method in class infomat.view.InfomatView
getZoomRectColor() - Method in class infomat.view.picture.SparsePicture
gheader - Variable in class infomat.view.sorter.SorterPanel
ginfo - Variable in class infomat.view.sorter.SorterPanel
globalWeight - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
globalWeightInGroupByGroup(IObjectGroup, IObjectGroup, IMatrix, boolean, Properties) - Static method in class infomat.vectorspace.weighting.TFIDFWeighter
  The central global weighter.
gramSchmidt(IObjectGrouping, SparseISimilarity) - Static method in class infomat.mro.Negator
gramSchmidt(Vector<IVector<IVectorIndex>>) - Static method in class infomat.mro.Negator
gridChanged - Variable in class infomat.view.InfomatView
gridColor - Variable in class infomat.view.picture.SparsePicture
GRIDCOLUMN - Static variable in class infomat.view.menu.Menu
GRIDCOLUMN - Static variable in class infomat.view.menu.ToolbarController
gridLayout - Variable in class infomat.view.InfomatView
GRIDROW - Static variable in class infomat.view.menu.Menu
GRIDROW - Static variable in class infomat.view.menu.ToolbarController
gridSize - Static variable in class infomat.view.picture.SparsePicture
gridX - Variable in class infomat.view.picture.SparsePartPicture
gridY - Variable in class infomat.view.picture.SparsePartPicture
group - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
group - Variable in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
group - Variable in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
group - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
group - Variable in class infomat.vectorspace.IObjectGroupCalculator
group - Variable in class infomat.view.group.GroupFrame
group - Variable in class infomat.view.group.GroupFrame.GroupInfo
group - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
group - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
groupChoice - Variable in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
groupChoice - Variable in class infomat.view.sorter.SorterPanel.SorterMethodPanel
groupColorMap - Variable in class infomat.view.grouping.settings.GroupingColoring
groupCounter - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
groupDir - Variable in class infomat.io.textresult.IObjectGroupingTextResult
groupDirectoryName - Variable in class infomat.io.textresult.IObjectGroupingTextResult
groupEditButton - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
groupFileNamesMap - Variable in class infomat.io.textresult.IObjectGroupingTextResult
GroupFrame - Class in infomat.view.group
  A tool for displaying the text content of a IObjectGroup.
GroupFrame(IObjectGroup, IObjectGrouping, boolean, InfomatModel, InfomatView) - Constructor for class infomat.view.group.GroupFrame
GroupFrame.GroupInfo - Class in infomat.view.group
GroupFrame.GroupInfo(IObjectGroup, IObjectGrouping, boolean, InfomatModel) - Constructor for class infomat.view.group.GroupFrame.GroupInfo
GroupFrameManager - Class in infomat.view.group
GroupFrameManager() - Constructor for class infomat.view.group.GroupFrameManager
groupFrameManager - Variable in class infomat.view.InfomatView
groupFrameMap - Variable in class infomat.view.group.GroupFrameManager
groupGroupingSimilarity(IObjectGroup, IObjectGrouping) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
  Uses getGroupRepresentation() in the ISimilarity.
groupGroupingSimilarityMeasure(IObjectGroup, IObjectGrouping) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
groupInfo - Variable in class infomat.view.group.GroupFrame
grouping - Variable in class infomat.io.IObjectGroupingIO
grouping - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
grouping - Variable in class infomat.io.textresult.IObjectGroupingTextResult
grouping - Variable in class infomat.mro.FileConverter
grouping - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
grouping - Variable in class infomat.view.group.GroupFrame.GroupInfo
grouping - Variable in class infomat.view.group.GroupFrame
grouping - Variable in class infomat.view.grouping.settings.GroupingFilePanel
grouping - Variable in class infomat.view.grouping.settings.GroupingSettings
grouping - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
grouping - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
grouping - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
grouping - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Groups
grouping - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
grouping - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
grouping - Variable in class infomat.view.sorter.SorterPanel.GroupingInfo
grouping - Variable in class infomat.view.sorter.SorterPanel.Groups
GROUPING_PANEL_HEIGHT - Static variable in class infomat.view.grouping.GroupingPanel
GroupingAlgorithm - Class in infomat.algorithms.grouping
  GroupingAlgorithm.
GroupingAlgorithm() - Constructor for class infomat.algorithms.grouping.GroupingAlgorithm
GroupingColoring - Class in infomat.view.grouping.settings
  Colors.
GroupingColoring(IObjectGrouping, boolean) - Constructor for class infomat.view.grouping.settings.GroupingColoring
groupingDesignation - Variable in class infomat.evaluation.IntrinsicEvaluation
GroupingFilePanel - Class in infomat.view.grouping.settings
GroupingFilePanel(InfomatModel, InfomatView, IObjectGrouping, boolean, boolean, Dimension) - Constructor for class infomat.view.grouping.settings.GroupingFilePanel
groupingMaxIdSoFar - Static variable in class infomat.vectorspace.IObjectGrouping
groupingNameTextField - Variable in class infomat.view.group.GroupFrame.GroupInfo
groupingNameTextField - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
groupingNameTextField - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
groupingNameTextField - Variable in class infomat.view.sorter.SorterPanel.GroupingInfo
groupingNameTextField - Variable in class infomat.view.sorter.SorterPanel
GroupingPanel - Class in infomat.view.grouping
  Displayer of info.
GroupingPanel(InfomatModel, InfomatView) - Constructor for class infomat.view.grouping.GroupingPanel
groupingPanel - Variable in class infomat.view.SessionPanel
GROUPINGPANELONOFF - Static variable in class infomat.view.menu.Menu
groupings - Variable in class infomat.vectorspace.IObjectSet
groupingSelection - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
GroupingSelectionPanel - Class in infomat.view.grouping
  Displayer of info.
GroupingSelectionPanel(InfomatModel, InfomatView, boolean, boolean) - Constructor for class infomat.view.grouping.GroupingSelectionPanel
GroupingSettings - Class in infomat.view.grouping.settings
GroupingSettings(IObjectGrouping, boolean) - Constructor for class infomat.view.grouping.settings.GroupingSettings
groupingSettings - Variable in class infomat.view.grouping.settings.OpacityPanel
GroupingSettingsManager - Class in infomat.view.grouping.settings
  One for each dimension, row and column.
GroupingSettingsManager(InfomatView, InfomatModel, boolean) - Constructor for class infomat.view.grouping.settings.GroupingSettingsManager
groupingSettingsMap - Variable in class infomat.view.grouping.settings.GroupingSettingsManager
GroupingSettingsPanel - Class in infomat.view.grouping.settings
  Displayer of info.
GroupingSettingsPanel(InfomatModel, InfomatView, IObjectSet, boolean, boolean) - Constructor for class infomat.view.grouping.settings.GroupingSettingsPanel
GroupingSettingsPanel.ColorChanger - Class in infomat.view.grouping.settings
GroupingSettingsPanel.ColorChanger(InfomatView, IObjectGrouping, boolean) - Constructor for class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
GroupingSettingsPanel.GroupInfo - Class in infomat.view.grouping.settings
GroupingSettingsPanel.GroupInfo(InfomatView, int, IObjectGrouping, IObjectGroup, boolean, boolean) - Constructor for class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
GroupingSettingsPanel.GroupingInfo - Class in infomat.view.grouping.settings
GroupingSettingsPanel.GroupingInfo(IObjectGrouping, InfomatModel, IObjectSet) - Constructor for class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
GroupingSettingsPanel.Groups - Class in infomat.view.grouping.settings
GroupingSettingsPanel.Groups(IObjectGrouping, boolean, boolean) - Constructor for class infomat.view.grouping.settings.GroupingSettingsPanel.Groups
GroupingSettingsPanel.Ordering - Class in infomat.view.grouping.settings
GroupingSettingsPanel.Ordering(InfomatModel, InfomatView, IObjectGrouping) - Constructor for class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
groupLabel - Variable in class infomat.view.info.DimensionInfoPanel
groupMeasureMap - Variable in class infomat.vectorspace.MeasureSorter.GroupMeasureComparator
groupMeasureMap - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
groupMeasureMap - Variable in class infomat.view.sorter.SorterPanel
groupMeasureMap - Variable in class infomat.view.sorter.SorterPanel.Groups
GroupMerger - Class in infomat.algorithms.grouping
  GroupMerger.
GroupMerger() - Constructor for class infomat.algorithms.grouping.GroupMerger
GroupMerger(Properties) - Constructor for class infomat.algorithms.grouping.GroupMerger
groupOrdered - Variable in class infomat.vectorspace.IObjectGrouping
GROUPPANEL_PREFERRED_SIZE - Static variable in class infomat.view.group.GroupFrame
groups - Variable in class infomat.view.sorter.SorterPanel
groupsCounted() - Method in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
gtio - Variable in class infomat.view.tools.ExportTextFrame
GUIDE - Static variable in class infomat.view.menu.Menu
Guide - Class in infomat.view.picture
  Draws guiding lines for the mouse pointer.
Guide(SparsePicture) - Constructor for class infomat.view.picture.Guide
guide - Variable in class infomat.view.picture.SparsePicture
gw - Variable in class infomat.io.IMatrixIO.IMatrixHandler

## H

HAND - Static variable in class infomat.view.menu.ToolbarController
hasIMatrix() - Method in class infomat.view.InfomatModel
  Do we have a matrix?
hasProperties - Variable in class mro.util.properties.dialog.PropertiesPanel
HasProperties - Interface in mro.util.properties
  An interface for classes that has a Properties-object.
HEIGHT - Variable in class infomat.view.InfomatOverview
HEIGHT - Variable in class infomat.view.InfomatView
HELP - Static variable in class infomat.view.menu.Menu
HierarchicalIObjectGrouping - Class in infomat.vectorspace
  A HierarchichalIObjectGrouping is a IObjectGrouping with special properties.
HierarchicalIObjectGrouping(String) - Constructor for class infomat.vectorspace.HierarchicalIObjectGrouping
highestRanked(int) - Method in class infomat.vectorspace.vector.IVector
  Returns the n highest ranked or as many as there is.
hold - Variable in class infomat.view.info.PixelInfoFrame
hold() - Method in class infomat.view.info.PixelInfoFrame
holdPixelInfoFrame - Static variable in class infomat.view.picture.SparsePicture
howCopyB - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
HTMLHelper - Class in mro.util
  A helper class.
HTMLHelper() - Constructor for class mro.util.HTMLHelper

## I

id - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
id - Variable in class infomat.io.IMatrixIO.IMatrixHandler
id - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
id - Variable in class infomat.io.TextWordIMatrixConstructor
id - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
id - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
id - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
id - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
id - Variable in class infomat.vectorspace.IObject
idCounter - Static variable in class infomat.io.TextDirectoryReader
identifier - Variable in class infomat.algorithms.grouping.GroupingAlgorithm
identifier - Variable in class infomat.algorithms.grouping.TopDownSplitter
idIObjectMap - Variable in class infomat.vectorspace.IObjectSet
idIterator - Static variable in class infomat.vectorspace.IObjectSet
ILabel - Class in infomat.vectorspace
  A label for any IObject.
ILabel(IObject) - Constructor for class infomat.vectorspace.ILabel
IMAGE - Static variable in class infomat.view.menu.Menu
image - Variable in class infomat.view.picture.SparsePartPicture
imageDimension - Variable in class infomat.view.picture.SparsePartPicture
imageDimension - Variable in class infomat.view.picture.SparsePicture
IMatrix - Class in infomat.vectorspace
  IMatrix represents the relations between two IObjectSet:s.
IMatrix(String, String) - Constructor for class infomat.vectorspace.IMatrix
IMatrix(IMatrix) - Constructor for class infomat.vectorspace.IMatrix
  Copy constructor.
IMatrixCell - Class in infomat.vectorspace
  An element in a IMatrix.
IMatrixCell(IObject, IObject, float, float) - Constructor for class infomat.vectorspace.IMatrixCell
IMatrixCell(IObject, IObject, float, float, float) - Constructor for class infomat.vectorspace.IMatrixCell
IMatrixCell(IObject, IObject, float) - Constructor for class infomat.vectorspace.IMatrixCell
IMatrixCell(IMatrixCell) - Constructor for class infomat.vectorspace.IMatrixCell
IMatrixCellFilter - Class in infomat.vectorspace
  Removes IMatrixCells, rows, and columns depending on their frequency.
IMatrixCellFilter() - Constructor for class infomat.vectorspace.IMatrixCellFilter
IMatrixCellFilter(Properties) - Constructor for class infomat.vectorspace.IMatrixCellFilter
IMatrixIO - Class in infomat.io
  For loading and saving an IMatrix.
IMatrixIO() - Constructor for class infomat.io.IMatrixIO
IMatrixIO.IMatrixHandler - Class in infomat.io
IMatrixIO.IMatrixHandler(IMatrix) - Constructor for class infomat.io.IMatrixIO.IMatrixHandler
IMatrixProjector - Class in infomat.vectorspace
IMatrixProjector() - Constructor for class infomat.vectorspace.IMatrixProjector
IMatrixRandomSplitter - Class in infomat.algorithms.matrix
  Matrix Random Splitter.
IMatrixRandomSplitter() - Constructor for class infomat.algorithms.matrix.IMatrixRandomSplitter
IMatrixSplitter - Class in infomat.algorithms.matrix
  Matrix Splitter.
IMatrixSplitter() - Constructor for class infomat.algorithms.matrix.IMatrixSplitter
imgFileChooser - Variable in class infomat.view.menu.Menu
inAction - Variable in class infomat.view.menu.ToolbarController
incDecButton - Variable in class infomat.view.sorter.SorterPanel.Ordering
index - Variable in class infomat.view.vector.IVectorIndexPanel
info(IMatrix, IObjectSet, IObjectSet) - Method in class infomat.vectorspace.IMatrixCellFilter
infoAndButtons - Variable in class infomat.view.algorithms.MatrixWeightingFrame
infoAndButtons - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
infomat - package infomat
  Infomat 080829 by Magnus Rosell 2008
infomat.algorithms.grouping - package infomat.algorithms.grouping
infomat.algorithms.labeling - package infomat.algorithms.labeling
infomat.algorithms.matrix - package infomat.algorithms.matrix
infomat.algorithms.reduction - package infomat.algorithms.reduction
infomat.bridges.jsdm - package infomat.bridges.jsdm
  "jsdm" is a package for importing data and using algorithms in the "Java Sparse Distrbuted Memory" package by Martin Hassel, see http://www.nada.kth.se/~xmartin/
  "bridges" is a package for importing data from and using algorithms in different other packages.
infomat.bridges.tct - package infomat.bridges.tct
  "tct" is a package for importing data from the "Text Clustering Toolkit", see http://mlg.ucd.ie/content/view/18/
  "bridges" is a package for importing data from and using algorithms in different other packages.
infomat.bridges.tct.algorithms.grouping - package infomat.bridges.tct.algorithms.grouping
infomat.evaluation - package infomat.evaluation
  "infomat.evaluation" contains methods for evaluation of groupings, represented using the "infomat.vectorspace" package.
infomat.io - package infomat.io
  "infomat.io" contains methods for exporting data from and importing data to the data structures of "infomat.vectorspace".
infomat.io.textresult - package infomat.io.textresult
  For constructing text results for IObjectGrouping:s: xml-files that through xsl-files can be viewed with a browser.
infomat.mro - package infomat.mro
  "infomat.mro" is a package that contains personal classes that I do not support in any way.
infomat.mro.synlex - package infomat.mro.synlex
infomat.vectorspace - package infomat.vectorspace
  "infomat.vectorspace" is the central data structure package of infomat.
infomat.vectorspace.ordering - package infomat.vectorspace.ordering
infomat.vectorspace.similarity - package infomat.vectorspace.similarity
infomat.vectorspace.vector - package infomat.vectorspace.vector
infomat.vectorspace.weighting - package infomat.vectorspace.weighting
infomat.view - package infomat.view
  "infomat.view" is the package that handles the GUI.
infomat.view.algorithms - package infomat.view.algorithms
infomat.view.evaluation - package infomat.view.evaluation
infomat.view.group - package infomat.view.group
infomat.view.grouping - package infomat.view.grouping
infomat.view.grouping.settings - package infomat.view.grouping.settings
infomat.view.info - package infomat.view.info
infomat.view.menu - package infomat.view.menu
infomat.view.picture - package infomat.view.picture
infomat.view.pixel - package infomat.view.pixel
infomat.view.similarity - package infomat.view.similarity
infomat.view.sorter - package infomat.view.sorter
infomat.view.tools - package infomat.view.tools
infomat.view.util - package infomat.view.util
infomat.view.vector - package infomat.view.vector
InfomatGUI - Class in infomat
  Starts the Infomat interface.
InfomatGUI() - Constructor for class infomat.InfomatGUI
InfomatModel - Class in infomat.view
  The heart! Keeps track of what the corpus and other stuff contains.
InfomatModel(MainWindow) - Constructor for class infomat.view.InfomatModel
infomatModel - Variable in class infomat.view.MainWindow
infomatModel - Variable in class infomat.view.menu.Menu
infomatModel - Variable in class infomat.view.tools.ExportTextFrame
InfomatOverview - Class in infomat.view
InfomatOverview(String, InfomatModel, InfomatView, ToolbarView) - Constructor for class infomat.view.InfomatOverview
InfomatPropertiesFrame - Class in infomat.view
InfomatPropertiesFrame(InfomatModel) - Constructor for class infomat.view.InfomatPropertiesFrame
InfomatView - Class in infomat.view
  The panel that displays the Infomat Image.
InfomatView(InfomatModel) - Constructor for class infomat.view.InfomatView
infomatView - Variable in class infomat.view.menu.Menu
infomatView - Variable in class infomat.view.menu.ToolbarController
infoPanel - Variable in class infomat.view.menu.ToolbarView
infoPanel - Variable in class mro.util.measures.dialog.MeasuresPanel
infoPanel - Variable in class mro.util.properties.dialog.PropertiesPanel
infoPathMap - Variable in class infomat.mro.ExperimentResultGenerator.InfoPool
infoPool - Variable in class infomat.mro.ExperimentResultGenerator
infoVector - Variable in class infomat.mro.ExperimentResultGenerator.InfoPool
init(IObjectGroup) - Method in class infomat.algorithms.grouping.KMeans
init() - Method in class infomat.Experimentator
initAlgs() - Static method in class infomat.view.algorithms.AlgorithmSelectionPanel
initateGraphics() - Method in class infomat.view.vector.IVectorPanel
initialize(IMatrix, SparseISimilarity) - Method in class infomat.io.TextWordIMatrixConstructor
initialize(Measures, String) - Method in class mro.util.measures.dialog.MeasuresPanel
initialize(HasProperties, String) - Method in class mro.util.properties.dialog.PropertiesPanel
initSimilarities() - Method in class infomat.view.similarity.SimilarityPanel
initSparsePicture() - Static method in class infomat.view.picture.SparsePictureConstructor
initWeighters() - Static method in class infomat.view.algorithms.MatrixWeightingSelectionPanel
inPVD - Variable in class mro.util.properties.PropertiesHandler
insertRelativeInVecVec(Vector<Vector<Result>>, Vector<RelativeEntry>) - Method in class mro.util.experimentation.ResultTable
insertRelativeTitlesInVecVec(Vector<Vector<String>>, Vector<RelativeEntry>, int) - Method in class mro.util.experimentation.ResultTable
insertSelfRelativeInVecVec(Vector<Vector<Result>>, Vector<RelativeEntry>) - Method in class mro.util.experimentation.ResultTable
intArrayToString(int[]) - Static method in class mro.util.Printer
IntrinsicEvaluation - Class in infomat.evaluation
  For calculating intrinsic quality measures.
IntrinsicEvaluation(IObjectGrouping, ISimilarity, String, String) - Constructor for class infomat.evaluation.IntrinsicEvaluation
intrinsicGroupEvaluation - Variable in class infomat.algorithms.grouping.TopDownSplitter
intrinsicGroupEvaluation - Variable in class infomat.evaluation.IntrinsicEvaluation
IntrinsicGroupEvaluation - Class in infomat.evaluation
  For calculating intrinsic quality measures per IObjectGroup.
IntrinsicGroupEvaluation(ISimilarity) - Constructor for class infomat.evaluation.IntrinsicGroupEvaluation
inverseOB - Variable in class infomat.view.vector.IVectorPanel
invert() - Method in class infomat.vectorspace.IMatrixCell
invert() - Method in class infomat.view.group.GroupFrame
invert() - Method in class infomat.view.group.GroupFrameManager
invert(GroupingSettingsManager) - Method in class infomat.view.grouping.settings.GroupingSettingsManager
invert() - Method in class infomat.view.InfomatView
invert() - Method in class infomat.view.similarity.SimilarityFrame
invert() - Method in class infomat.view.similarity.SimilarityManager
  Called from SimilarityFrame.
invert() - Method in class mro.util.doublehashmap.DoubleHashMap
  Inverts the mapping, so the fist index becomes the second.
invert() - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Inverts the mapping, so the fist index becomes the second.
invert() - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
invertMatrix() - Method in class infomat.vectorspace.IMatrix
invertMatrix() - Method in class infomat.view.InfomatModel
INVERTMATRIX - Static variable in class infomat.view.menu.Menu
invSelB - Variable in class infomat.view.vector.IVectorPanel
inWhichIObjectGroup(IObject) - Method in class infomat.vectorspace.IObjectGrouping
  Returns the IObjectGroup in this IObjectGrouping that contains this IObject.
inWhichIObjectGroupOrdered(IObject) - Method in class infomat.vectorspace.IObjectGrouping
  Returns the number of the IObjectGroup in this IObjectGrouping that contains this IObject.
io - Variable in class infomat.vectorspace.ILabel
IObject - Class in infomat.vectorspace
  A IObject is either an object or a feature.
IObject(String, int) - Constructor for class infomat.vectorspace.IObject
IObject(String, String, int) - Constructor for class infomat.vectorspace.IObject
IObject(String, int, int) - Constructor for class infomat.vectorspace.IObject
IObject(String, String, int, int) - Constructor for class infomat.vectorspace.IObject
IObjectFloatMapEntryComparator - Class in infomat.algorithms.labeling
  Orders Map.Entry:s in order of Float, highest first.
IObjectFloatMapEntryComparator(IVector<IObject>) - Constructor for class infomat.algorithms.labeling.IObjectFloatMapEntryComparator
IObjectFloatMapEntryComparator(HashMap<IObject, Float>) - Constructor for class infomat.algorithms.labeling.IObjectFloatMapEntryComparator
iobjectFloatSorter - Variable in class infomat.io.textresult.IObjectGroupingTextResult
IObjectFloatSorter - Class in infomat.vectorspace.ordering
  A convenience class for sorting.
IObjectFloatSorter() - Constructor for class infomat.vectorspace.ordering.IObjectFloatSorter
IObjectFloatSorter.MapEntryComparator - Class in infomat.vectorspace.ordering
  A private class that is used to order MapEntry:s.
IObjectFloatSorter.MapEntryComparator() - Constructor for class infomat.vectorspace.ordering.IObjectFloatSorter.MapEntryComparator
IObjectGroup - Class in infomat.vectorspace
  A IObjectGroup is a set of IObject:s.
IObjectGroup(String) - Constructor for class infomat.vectorspace.IObjectGroup
IObjectGroup(String, int) - Constructor for class infomat.vectorspace.IObjectGroup
IObjectGroup(String, int, int) - Constructor for class infomat.vectorspace.IObjectGroup
  Used by IObjectGrouping and IObjectSet.
IObjectGroup(IObjectGroup) - Constructor for class infomat.vectorspace.IObjectGroup
  Copy constructor.
IObjectGroup.IObjectComparator - Class in infomat.vectorspace
  A private class that is used to order the IObjects.
IObjectGroup.IObjectComparator(IObjectGroup) - Constructor for class infomat.vectorspace.IObjectGroup.IObjectComparator
IObjectGroup.MapEntryComparator - Class in infomat.vectorspace
  A private class that is used to order the MapEntry:s.
IObjectGroup.MapEntryComparator() - Constructor for class infomat.vectorspace.IObjectGroup.MapEntryComparator
IObjectGroupCalculator - Class in infomat.vectorspace
  IObjectGroupCalculator helps with calculations on IObjectGroup:s.
IObjectGroupCalculator(IObjectGroup, IMatrix) - Constructor for class infomat.vectorspace.IObjectGroupCalculator
IObjectGrouping - Class in infomat.vectorspace
  A IObjectGrouping is a set of IObjectGroup:s.
IObjectGrouping(String, int) - Constructor for class infomat.vectorspace.IObjectGrouping
IObjectGrouping(String) - Constructor for class infomat.vectorspace.IObjectGrouping
IObjectGrouping(IObjectGrouping) - Constructor for class infomat.vectorspace.IObjectGrouping
  Copy constructor.
IObjectGroupingIO - Class in infomat.io
  For loading and saving a IObjectGroup.
IObjectGroupingIO() - Constructor for class infomat.io.IObjectGroupingIO
IObjectGroupingIO.IObjectGroupingHandler - Class in infomat.io
IObjectGroupingIO.IObjectGroupingHandler(IObjectGroupingIO, boolean, IMatrix) - Constructor for class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
IObjectGroupingTextResult - Class in infomat.io.textresult
  For loading and saving groupings to text.
IObjectGroupingTextResult() - Constructor for class infomat.io.textresult.IObjectGroupingTextResult
IObjectGroupingTextResult(Properties) - Constructor for class infomat.io.textresult.IObjectGroupingTextResult
IObjectGroupNode - Class in infomat.vectorspace
  A IObjectGroupNode is a node in a HierarchicalIObjectGrouping.
IObjectGroupNode(IObjectGroup, IObjectGroupNode) - Constructor for class infomat.vectorspace.IObjectGroupNode
iobjectGroupNotSavedFileName - Variable in class infomat.io.textresult.IObjectGroupingTextResult
IObjectGroupTextResult - Class in infomat.io.textresult
  For loading and saving groups to text.
IObjectGroupTextResult() - Constructor for class infomat.io.textresult.IObjectGroupTextResult
IObjectGroupTextResult(Properties) - Constructor for class infomat.io.textresult.IObjectGroupTextResult
IObjectLexicalComparator - Class in infomat.vectorspace
  A private class that is used to order the IObjects in lexical order.
IObjectLexicalComparator() - Constructor for class infomat.vectorspace.IObjectLexicalComparator
iobjectNotSavedFileName - Variable in class infomat.io.textresult.IObjectGroupingTextResult
IObjectSet - Class in infomat.vectorspace
  A IObjectSet is a complete set of IObject:s.
IObjectSet(String) - Constructor for class infomat.vectorspace.IObjectSet
IObjectSet(IObjectSet) - Constructor for class infomat.vectorspace.IObjectSet
  Copy constructor.
iobjectsPanel - Variable in class infomat.view.tools.StoplistFrame
IObjectWeightComparator - Class in infomat.algorithms.labeling
  Orders IObjects in order of weight, highest first.
IObjectWeightComparator(IVector<IObject>) - Constructor for class infomat.algorithms.labeling.IObjectWeightComparator
IObjectWeightComparator(HashMap<IObject, Float>) - Constructor for class infomat.algorithms.labeling.IObjectWeightComparator
iogrelative - Variable in class mro.util.measures.Measure
iogroup - Variable in class infomat.bridges.jsdm.JSDMWrapper
ioGroup - Variable in class infomat.vectorspace.IObjectGroupNode
ioGroupValueMap - Variable in class infomat.vectorspace.SoftIObjectGrouping
ioReprMap - Variable in class infomat.bridges.jsdm.JSDMWrapper
ios - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
ios - Variable in class infomat.view.grouping.GroupingSelectionPanel
ios - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
ios - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
ios - Variable in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
ios - Variable in class infomat.view.sorter.SorterPanel.GroupingInfo
ios - Variable in class infomat.view.sorter.SorterPanel
ios - Variable in class infomat.view.tools.MatrixSummaryFrame.PartInfo
ioString - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
ioString - Variable in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
ioString - Variable in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
isCombinationClick(IMatrix, float, HashSet<IObject>, HashSet<IObject>) - Method in class infomat.mro.synlex.SynlexGrouper
ISimilarity - Class in infomat.vectorspace.similarity
  Similarity Measure.
ISimilarity() - Constructor for class infomat.vectorspace.similarity.ISimilarity
ISimilarity(ISimilarity) - Constructor for class infomat.vectorspace.similarity.ISimilarity
isSelected() - Method in class infomat.view.vector.IVectorIndexPanel
iterator() - Method in class infomat.vectorspace.vector.IVector
IVector<T extends IVectorIndex> - Class in infomat.vectorspace.vector
  An implementation of a sparse vector.
IVector() - Constructor for class infomat.vectorspace.vector.IVector
IVector(HashMap<T, Float>) - Constructor for class infomat.vectorspace.vector.IVector
  Copies the map.
IVector(IVector<T>) - Constructor for class infomat.vectorspace.vector.IVector
  Copies the map.
IVector.TLiteralComparator - Class in infomat.vectorspace.vector
  Private class for ordering the Ts in literal order.
IVector.TLiteralComparator() - Constructor for class infomat.vectorspace.vector.IVector.TLiteralComparator
IVector.TValueComparator - Class in infomat.vectorspace.vector
  Private class for ordering the Ts in value order.
IVector.TValueComparator(HashMap<T, Float>) - Constructor for class infomat.vectorspace.vector.IVector.TValueComparator
IVectorCategorizer - Class in infomat.algorithms.grouping
  IVectorCategorizer
IVectorCategorizer() - Constructor for class infomat.algorithms.grouping.IVectorCategorizer
IVectorCategorizer(Properties) - Constructor for class infomat.algorithms.grouping.IVectorCategorizer
IVectorCategorizer(SparseISimilarity, Vector<IVector<IVectorIndex>>) - Constructor for class infomat.algorithms.grouping.IVectorCategorizer
IVectorCategorizer(SparseISimilarity, Vector<IVector<IVectorIndex>>, Properties) - Constructor for class infomat.algorithms.grouping.IVectorCategorizer
ivectorCategorizerGroupingNumber - Static variable in class infomat.algorithms.grouping.IVectorCategorizer
IVectorIndex - Interface in infomat.vectorspace.vector
IVectorIndexPanel<T extends IVectorIndex> - Class in infomat.view.vector
IVectorIndexPanel(int, T, float, boolean, InfomatModel) - Constructor for class infomat.view.vector.IVectorIndexPanel
IVectorIO<T extends IVectorIndex> - Class in infomat.io
  For loading and saving a IVector.
IVectorIO() - Constructor for class infomat.io.IVectorIO
IVectorIO.IVectorOfIObjectsHandler<T extends IVectorIndex> - Class in infomat.io
IVectorIO.IVectorOfIObjectsHandler(IObjectGroup) - Constructor for class infomat.io.IVectorIO.IVectorOfIObjectsHandler
ivectorPanel - Variable in class infomat.view.group.GroupFrame
IVectorPanel<T extends IVectorIndex> - Class in infomat.view.vector
  A JPanel that presents the content of a IVector.
IVectorPanel(InfomatModel) - Constructor for class infomat.view.vector.IVectorPanel
IVectorPanel(InfomatModel, boolean, boolean) - Constructor for class infomat.view.vector.IVectorPanel
IVectorPanel(InfomatModel, boolean, IObjectGroup) - Constructor for class infomat.view.vector.IVectorPanel
IVectorPanel.OrderSelectionPanel - Class in infomat.view.vector
IVectorPanel.OrderSelectionPanel(IVectorPanel) - Constructor for class infomat.view.vector.IVectorPanel.OrderSelectionPanel
IVectorString - Class in infomat.vectorspace.vector
  A String to be used in a IVector.
IVectorString(String) - Constructor for class infomat.vectorspace.vector.IVectorString
IVectorStringIO - Class in infomat.io
  For loading and saving a IVector.
IVectorStringIO() - Constructor for class infomat.io.IVectorStringIO
IVectorTextResult - Class in infomat.io.textresult
  For loading and saving groupings to text.
IVectorTextResult() - Constructor for class infomat.io.textresult.IVectorTextResult
ivp - Variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
ivp - Variable in class infomat.view.vector.Test

## J

JohanEvaluator - Class in infomat.mro
  Simple class for running clustering without the GUI.
JohanEvaluator() - Constructor for class infomat.mro.JohanEvaluator
JohanPrepare - Class in infomat.mro
  Simple class for running clustering without the GUI.
JohanPrepare() - Constructor for class infomat.mro.JohanPrepare
JSDMSimilarity - Class in infomat.bridges.jsdm
  Uses the Cosine Similarity in JSDM, but does not normalize the group vectors.
JSDMSimilarity(JSDMWrapper) - Constructor for class infomat.bridges.jsdm.JSDMSimilarity
jsdmw - Variable in class infomat.bridges.jsdm.JSDMSimilarity
JSDMWrapper - Class in infomat.bridges.jsdm
JSDMWrapper() - Constructor for class infomat.bridges.jsdm.JSDMWrapper
JSDMWrapper(Properties) - Constructor for class infomat.bridges.jsdm.JSDMWrapper

## K

k - Variable in class infomat.io.IMatrixIO.IMatrixHandler
keySetOfSecondIndexForElementInFirst(Object) - Method in class mro.util.doublehashmap.DoubleHashMap
keySetOfSecondIndexForElementInFirst(F) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
kind - Variable in class infomat.vectorspace.IObject
kind - Variable in class mro.util.properties.Property
kmeans - Variable in class infomat.algorithms.grouping.BisectingKMeans
KMeans - Class in infomat.algorithms.grouping
  KMeans
KMeans() - Constructor for class infomat.algorithms.grouping.KMeans
KMeans(Properties) - Constructor for class infomat.algorithms.grouping.KMeans
KMeans(ISimilarity) - Constructor for class infomat.algorithms.grouping.KMeans
KMeans(ISimilarity, Properties) - Constructor for class infomat.algorithms.grouping.KMeans
kmeansClusteringNumber - Static variable in class infomat.algorithms.grouping.KMeans

## L

l - Variable in class infomat.io.IMatrixIO.IMatrixHandler
Labeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups.
Labeler() - Constructor for class infomat.algorithms.labeling.Labeler
labeler - Variable in class infomat.view.algorithms.LabelFrame
labeler() - Method in class infomat.view.InfomatModel
LabelExamples - Class in infomat.mro
LabelExamples() - Constructor for class infomat.mro.LabelExamples
LabelFrame - Class in infomat.view.algorithms
LabelFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.algorithms.LabelFrame
labelFrame - Variable in class infomat.view.InfomatModel
LABELFRAME_PREFERRED_SIZE - Variable in class infomat.view.algorithms.LabelFrame
labelGroup(IObjectGroup, SparseISimilarity, HashMap<IObject, Float>) - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
  Can not be used separately, since it relies on having information on the parent group.
labelGroup(IObjectGroup, SparseISimilarity, HashMap<IObject, Float>) - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
  Can not be used separately, since it relyes on having information on the parent group.
labelGroup(IObjectGroup, SparseISimilarity, HashMap<IObject, Float>) - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
  Can not be used separately, since it relyes on having information on the parent group.
labelGroup(IObjectGroup, SparseISimilarity, HashMap<IObject, Float>, Weighter) - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
  Can not be used separately, since it relyes on having information on the whole set.
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.CentroidLabeler
  Constructs ILables for all IObjectGroup:s in the IObjectGrouping by choosing the higest ranked IObject:s in the centroids.
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.Labeler
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.RelativeLabeler
  Constructs ILables for all IObjectGroup:s in the IObjectGrouping by choosing the higest ranked IObject:s in the centroids.
labelGrouping(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
LabelReducer - Class in infomat.algorithms.labeling
  Reduces IObjectGroups and IObjectGroupings using their ILabels.
LabelReducer() - Constructor for class infomat.algorithms.labeling.LabelReducer
LabelReducer(Properties) - Constructor for class infomat.algorithms.labeling.LabelReducer
labelReducer - Variable in class infomat.view.algorithms.LabelFrame
labelSingleGroup(IObjectGroup, SparseISimilarity) - Method in class infomat.algorithms.labeling.CentroidLabeler
  Constructs ILables for the IObjectGroup by choosing the higest ranked IObject:s in the centroid.
labelSingleGroup(IObjectGroup, IObjectGroup) - Method in class infomat.algorithms.labeling.RelativeLabeler
largeImageCol - Variable in class infomat.view.picture.SparsePartPicture
largeImageRow - Variable in class infomat.view.picture.SparsePartPicture
largerThan(float) - Method in class infomat.vectorspace.vector.IVector
  Returns only those that larger than the specified value.
LatexHelper - Class in mro.util
  A helper class.
LatexHelper() - Constructor for class mro.util.LatexHelper
leastDF - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
leastTF - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
leftPanel - Variable in class infomat.view.pixel.PixelFrame
leftWindowSize - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
linearScaleOpacity(float, float, float, float) - Method in class infomat.view.picture.SparsePixel
literalOB - Variable in class infomat.view.vector.IVectorPanel
load(String) - Method in class infomat.bridges.jsdm.JSDMWrapper
  Loads.
load(String, IObjectGroup) - Method in class infomat.bridges.jsdm.JSDMWrapper
  Loads.
load(File) - Method in class infomat.bridges.jsdm.RIIO
  Loads a IMatrix from file in XML format
load(InputSource) - Method in class infomat.bridges.jsdm.RIIO
  Load RandomIndex from file.
load(File) - Method in class infomat.io.IMatrixIO
  Loads a IMatrix from file in XML format
load(InputSource) - Method in class infomat.io.IMatrixIO
load(boolean, IMatrix, File) - Method in class infomat.io.IObjectGroupingIO
load(InputSource) - Method in class infomat.io.IObjectGroupingIO
load(IObjectGroup, File) - Method in class infomat.io.IVectorIO
load(InputSource, IObjectGroup) - Method in class infomat.io.IVectorIO
load(IObjectGroup, File) - Method in class infomat.io.OldIVectorIO
load(InputSource, IObjectGroup) - Method in class infomat.io.OldIVectorIO
load(File) - Method in class infomat.io.TextDirectoryReader
  Loads a IMatrix from a directory.
load(File) - Method in class infomat.io.TokenFileTextWordIO
  Loads a IMatrix from file in XML format
load(InputSource) - Method in class infomat.io.TokenFileTextWordIO
load(File) - Method in class infomat.mro.synlex.SynlexIO
  Loads a IMatrix from file in XML format
load(InputSource) - Method in class infomat.mro.synlex.SynlexIO
load(File) - Method in class infomat.vectorspace.CorpusIO
  Loads a corpus from file in XML format
load(InputSource) - Method in class infomat.vectorspace.CorpusIO
load(File) - Method in class infomat.vectorspace.DocumentGroupingIO
  Loads a DocumentGrouping from file in XML format
load(InputSource) - Method in class infomat.vectorspace.DocumentGroupingIO
load - Variable in class infomat.view.grouping.settings.GroupingFilePanel
load - Variable in class infomat.view.tools.StoplistFrame
load() - Method in class infomat.view.vector.IVectorPanel
load(String) - Static method in class mro.util.experimentation.ResultTableStructure
  Loads a ResultTableStructure-object from a file with the specified file name.
load(File) - Static method in class mro.util.experimentation.ResultTableStructure
  Loads a ResultTableStructure-object from the specified file.
load(String) - Static method in class mro.util.experimentation.Table
  Loads a Table-object from a file with the specified file name.
load(File) - Static method in class mro.util.experimentation.Table
  Loads a Table-object from the specified file.
load - Variable in class mro.util.measures.dialog.MeasuresPanel.FilePanel
load(String) - Static method in class mro.util.measures.Measures
  Loads a measures-object from a file with the specified file name.
load(File) - Static method in class mro.util.measures.Measures
  Loads a measures-object from the specified file.
load - Variable in class mro.util.properties.dialog.PropertiesPanel.FilePanel
load(String) - Static method in class mro.util.properties.Properties
  Loads a Properties-object from a file with the specified file name.
load(File) - Static method in class mro.util.properties.Properties
  Loads a Properties-object from the specified file.
loadable - Variable in class infomat.view.vector.IVectorPanel
loadB - Variable in class infomat.view.vector.IVectorPanel
loadCompressed(File) - Method in class infomat.bridges.jsdm.RIIO
loadCompressed(File) - Method in class infomat.io.IMatrixIO
loadCompressed(boolean, IMatrix, File) - Method in class infomat.io.IObjectGroupingIO
loadCompressed(IObjectGroup, File) - Method in class infomat.io.IVectorIO
loadCompressed(IObjectGroup, File) - Method in class infomat.io.OldIVectorIO
loadCompressed(File) - Method in class infomat.io.TokenFileTextWordIO
loadCompressed(File) - Method in class infomat.mro.synlex.SynlexIO
loadCompressed(File) - Method in class infomat.vectorspace.CorpusIO
loadCompressed(File) - Method in class infomat.vectorspace.DocumentGroupingIO
loadMatrix(Properties) - Static method in class infomat.Clusterer
loadPropertiesInDirectory(String) - Method in class mro.util.properties.PropertiesPool
  Loads all Properties stored as files in a directory.
loadPropertiesInDirectory(File) - Method in class mro.util.properties.PropertiesPool
  Loads all Properties stored as files in a directory.
loadXML(InputSource) - Static method in class mro.util.experimentation.ResultTableStructure
  Loads a ResultTableStructure-object from an `java.io.InputSource`.
loadXML(InputSource) - Static method in class mro.util.experimentation.Table
  Loads a Table-object from an `java.io.InputSource`.
loadXML(InputSource) - Static method in class mro.util.measures.Measures
  Loads a measures-object from an `java.io.InputSource`.
loadXML(InputSource) - Static method in class mro.util.properties.Properties
  Loads a Properties-object from an `java.io.InputSource`.
localCount - Variable in class infomat.vectorspace.IMatrixCell
localCount() - Method in class infomat.vectorspace.IObjectGroupCalculator
localRelativeFrequency() - Method in class infomat.vectorspace.IObjectGroupCalculator
localRowWeight - Variable in class infomat.vectorspace.weighting.TFWeighter
localWeight - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
localWeight - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
localWeight - Variable in class infomat.vectorspace.IMatrixCell
localWeightInGroupByGroup(IObjectGroup, IObjectGroup, IMatrix, boolean, Properties) - Static method in class infomat.vectorspace.weighting.TFIDFWeighter
  The central local weighter.
localWeightInGroupByGroup(IObjectGroup, IObjectGroup, IMatrix, boolean, Properties) - Static method in class infomat.vectorspace.weighting.TFWeighter
  The central local weighter.
location - Variable in class infomat.vectorspace.IObject
locationB - Variable in class infomat.view.vector.IVectorIndexPanel
LocationGrouper - Class in infomat.algorithms.grouping
  Groups IObjects depeneding on their location-string.
LocationGrouper() - Constructor for class infomat.algorithms.grouping.LocationGrouper
LocationGrouper(Properties) - Constructor for class infomat.algorithms.grouping.LocationGrouper
locationGroupingNumber - Static variable in class infomat.algorithms.grouping.LocationGrouper
locationPath - Variable in class infomat.vectorspace.IObject
log(T, double) - Method in class infomat.vectorspace.vector.IVector
  Sets this value to its logarithm with the specified base.
log(double) - Method in class infomat.vectorspace.vector.IVector
  Uses the log(T, double) method - takes the logarithm of all elements using the provided base.
log(double, double) - Static method in class mro.util.MoreMath
log10(double) - Static method in class mro.util.MoreMath
log2(double) - Static method in class mro.util.MoreMath
logOf10 - Static variable in class mro.util.MoreMath
logOf2 - Static variable in class mro.util.MoreMath
longestCommonStart(String, String) - Static method in class mro.util.PathHelper
  Used by infomat.algorithms.LocationGrouper
longestString() - Method in class infomat.view.util.AlternatingButton
lw - Variable in class infomat.io.IMatrixIO.IMatrixHandler

## M

m - Variable in class infomat.io.IMatrixIO.IMatrixHandler
m - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
main(String[]) - Static method in class infomat.bridges.jsdm.RIClusterer
main(String[]) - Static method in class infomat.bridges.jsdm.RIWrapperClusterer
main(String[]) - Static method in class infomat.Clusterer
main(String[]) - Static method in class infomat.ExampleClusterer
main(String[]) - Static method in class infomat.Experimentator
main(String[]) - Static method in class infomat.InfomatGUI
  Start Infomat Interface!
main(String[]) - Static method in class infomat.mro.Experimentator
main(String[]) - Static method in class infomat.mro.ExperimentatorNumberOfWords
main(String[]) - Static method in class infomat.mro.ExperimentatorReductionReduction
main(String[]) - Static method in class infomat.mro.ExperimentResultGenerator
main(String[]) - Static method in class infomat.mro.FileConverter
main(String[]) - Static method in class infomat.mro.JohanEvaluator
main(String[]) - Static method in class infomat.mro.JohanPrepare
main(String[]) - Static method in class infomat.mro.LabelExamples
main(String[]) - Static method in class infomat.mro.NegationClusterer
main(String[]) - Static method in class infomat.mro.synlex.SynlexExample
main(String[]) - Static method in class infomat.mro.WTClusterer
main(String[]) - Static method in class infomat.mro.WTExperimentator
main(String[]) - Static method in class infomat.Test
main(String[]) - Static method in class infomat.view.MainWindow
  Start Infomat Interface!
main(String[]) - Static method in class infomat.view.vector.Test
main(String[]) - Static method in class infomat.WriteProperties
main(String[]) - Static method in class mro.util.experimentation.ExperimentResultGenerator
main(String[]) - Static method in class mro.util.experimentation.ResultTableStructure
mainPanel - Variable in class infomat.view.algorithms.MatrixWeightingFrame
mainPanel - Variable in class infomat.view.SessionPanel
mainPanel - Variable in class infomat.view.similarity.SimilarityFrame
mainWindow - Variable in class infomat.view.InfomatModel
MainWindow - Class in infomat.view
  Starts everything.
MainWindow() - Constructor for class infomat.view.MainWindow
mainWindow - Variable in class infomat.view.menu.Menu
mainWindow - Variable in class infomat.view.tools.ExportTextFrame
makeAverageColor() - Method in class infomat.view.picture.SparsePicture
makeAverageColor() - Method in class infomat.view.picture.SparsePixel
makeAverageColumnColor() - Method in class infomat.view.picture.SparsePartPicture
makeAverageColumnColor() - Method in class infomat.view.picture.SparsePicture
makeComboBox() - Method in class infomat.view.algorithms.AlgorithmSelectionPanel
makeComboBox() - Method in class infomat.view.algorithms.MatrixWeightingSelectionPanel
makeComboBox(IObjectSet) - Method in class infomat.view.evaluation.EvaluationSelectionPanel
makeComboBox(IObjectSet) - Method in class infomat.view.grouping.GroupingSelectionPanel
makeCoordToPixelMap() - Method in class infomat.view.picture.SparsePicture
makeEntropyMatrix(String[][]) - Method in class infomat.mro.ExperimentResultGenerator
makeImage() - Method in class infomat.view.InfomatOverview
makeImage() - Method in class infomat.view.picture.SparsePartPicture
  Should not be run several times.
makeImage() - Method in class infomat.view.picture.SparsePicture
makeLabeling() - Method in class infomat.view.algorithms.LabelFrame
makeLargeImageCoordLimits(int, int) - Static method in class infomat.view.picture.SparsePictureConstructor
makeLatexTableFile() - Method in class infomat.mro.ExperimentResultGenerator
makeMatrixNormalizedDifferenceOnRowNr(Measure[][], int) - Method in class infomat.mro.ExperimentResultGenerator
makeNameMeasureMap(Vector<Measure>) - Method in class mro.util.measures.MeasureGroup
makeNavigationButton(String, String, String, String, Boolean) - Method in class infomat.view.menu.ToolbarView
makeNewSettingsForAllGroupings() - Method in class infomat.view.grouping.settings.GroupingSettingsManager
makeNumberOfClustersMatrix(String[][], String) - Method in class infomat.mro.ExperimentResultGenerator
makeNumberOfTextsMatrix(String[][]) - Method in class infomat.mro.ExperimentResultGenerator
makeStartGrouping() - Method in class infomat.vectorspace.IObjectSet
  Makes a IObjectGrouping consisting of one IObjectGroup and sets it to be the current IObjectGrouping.
makeTitle() - Method in class infomat.view.info.DimensionInfoPanel
makeWeightGroupingRelativeGroupingOfOtherSet(IObjectGroup, IObjectGrouping, ISimilarity) - Method in class infomat.algorithms.grouping.RelativeClusterer
MANUAL - Static variable in class infomat.view.menu.Menu
map - Variable in class mro.util.CommonPath
map - Variable in class mro.util.experimentation.PathTable
map - Variable in class mro.util.experimentation.Table
mapEntryComparator - Variable in class infomat.vectorspace.ordering.IObjectFloatSorter
MatlabHelper - Class in mro.util
  A helper class.
MatlabHelper() - Constructor for class mro.util.MatlabHelper
matrix - Variable in class infomat.algorithms.grouping.RelativeClusterer
matrix - Variable in class infomat.algorithms.labeling.RelativeLabeler
matrix - Variable in class infomat.algorithms.labeling.WeightRankingBoostLabeler
matrix - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
matrix - Variable in class infomat.evaluation.Evaluation
matrix - Variable in class infomat.evaluation.MatrixMeasures
matrix - Variable in class infomat.Experimentator
matrix - Variable in class infomat.io.IMatrixIO
matrix - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
matrix - Variable in class infomat.io.IObjectGroupingIO
matrix - Variable in class infomat.io.TextDirectoryReader
matrix - Variable in class infomat.io.textresult.IObjectGroupingTextResult
matrix - Variable in class infomat.io.TextWordIMatrixConstructor
matrix - Variable in class infomat.io.TokenFileTextWordIO
matrix - Variable in class infomat.mro.Experimentator
matrix - Variable in class infomat.mro.ExperimentatorNumberOfWords
matrix - Variable in class infomat.mro.ExperimentatorReductionReduction
matrix - Variable in class infomat.mro.FileConverter
matrix - Variable in class infomat.mro.synlex.SynlexIO
matrix - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
matrix - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
matrix - Variable in class infomat.vectorspace.DocumentGroupingIO
matrix - Variable in class infomat.vectorspace.IObjectGroupCalculator
matrix - Variable in class infomat.vectorspace.similarity.SparseDotSimilarity
matrix - Variable in class infomat.vectorspace.similarity.SparseOverlapSimilarity
matrix - Variable in class infomat.view.algorithms.LabelFrame
matrix - Variable in class infomat.view.algorithms.MatrixFilterFrame
matrix - Variable in class infomat.view.algorithms.MatrixWeightingFrame
matrix - Variable in class infomat.view.InfomatModel
matrix - Variable in class infomat.view.picture.SparsePicture
matrix - Static variable in class infomat.view.picture.SparsePictureConstructor
matrix - Variable in class infomat.view.sorter.SorterFrame
matrix - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
matrix - Variable in class infomat.view.tools.ExportTextFrame
matrix - Variable in class infomat.view.tools.MatrixSummaryFrame
matrix - Variable in class infomat.view.tools.MatrixSummaryFrame.PartInfo
matrix - Variable in class infomat.view.tools.StoplistFrame
matrixCellFilter - Variable in class infomat.view.algorithms.MatrixFilterFrame
matrixCells - Variable in class infomat.view.picture.SparsePixel
MatrixFilterFrame - Class in infomat.view.algorithms
MatrixFilterFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.algorithms.MatrixFilterFrame
matrixFilterFrame - Variable in class infomat.view.InfomatModel
MATRIXFILTERFRAME_PREFERRED_SIZE - Variable in class infomat.view.algorithms.MatrixFilterFrame
MatrixMeasures - Class in infomat.evaluation
  For calculating intrinsic quality measures.
MatrixMeasures(IMatrix, IObjectGrouping, IObjectGrouping, String, String, String) - Constructor for class infomat.evaluation.MatrixMeasures
matrixSplitter - Variable in class infomat.algorithms.matrix.IMatrixRandomSplitter
matrixSummary() - Method in class infomat.view.InfomatModel
MATRIXSUMMARY - Static variable in class infomat.view.menu.Menu
matrixSummaryFrame - Variable in class infomat.view.InfomatModel
MatrixSummaryFrame - Class in infomat.view.tools
MatrixSummaryFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.tools.MatrixSummaryFrame
MatrixSummaryFrame.PartInfo - Class in infomat.view.tools
MatrixSummaryFrame.PartInfo(IMatrix, boolean) - Constructor for class infomat.view.tools.MatrixSummaryFrame.PartInfo
MatrixWeightingFrame - Class in infomat.view.algorithms
MatrixWeightingFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.algorithms.MatrixWeightingFrame
matrixWeightingFrame - Variable in class infomat.view.InfomatModel
MATRIXWEIGHTINGFRAME_PREFERRED_SIZE - Variable in class infomat.view.algorithms.MatrixWeightingFrame
matrixWeightingSelectionPanel - Variable in class infomat.view.algorithms.MatrixWeightingFrame
MatrixWeightingSelectionPanel - Class in infomat.view.algorithms
  A JPanel for choosing which Clustering Algorithm to use.
MatrixWeightingSelectionPanel(MatrixWeightingFrame) - Constructor for class infomat.view.algorithms.MatrixWeightingSelectionPanel
maxIdSoFar - Static variable in class infomat.vectorspace.IObjectGroup
maxOpacity - Variable in class infomat.view.grouping.settings.GroupingSettings
maxOpacity - Variable in class infomat.view.InfomatView
maxSlider - Variable in class infomat.view.grouping.settings.OpacityPanel
maxW - Static variable in class infomat.vectorspace.IMatrix
measure - Variable in class mro.util.measures.dialog.MeasuresPanel.InfoPanel
measure - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
Measure - Class in mro.util.measures
  A measure.
Measure() - Constructor for class mro.util.measures.Measure
Measure(String, double, String) - Constructor for class mro.util.measures.Measure
Measure(String, double, String, String) - Constructor for class mro.util.measures.Measure
Measure(Measure) - Constructor for class mro.util.measures.Measure
  Copy Constructor.
Measure(String, String, String, String) - Constructor for class mro.util.measures.Measure
  To read from XML files...
Measure(String, double, String, IObjectGroup) - Constructor for class mro.util.measures.Measure
measureAbbreviation - Variable in class mro.util.experimentation.PathEntry
measureAbbreviation - Variable in class mro.util.experimentation.Result
MeasureAbbreviationTable - Class in mro.util.experimentation
MeasureAbbreviationTable() - Constructor for class mro.util.experimentation.MeasureAbbreviationTable
measureAbbreviationTable - Variable in class mro.util.experimentation.ResultTableStructure
measureAbbreviationTable - Variable in class mro.util.experimentation.ResultTableStructureHandler
measureBorderColor - Variable in class mro.util.measures.dialog.MeasuresPanel
MeasureComparator - Class in mro.util.measures
MeasureComparator() - Constructor for class mro.util.measures.MeasureComparator
MeasureGroup - Class in mro.util.measures
  A group of Measure:s for the purpose of organization.
MeasureGroup() - Constructor for class mro.util.measures.MeasureGroup
MeasureGroup(String) - Constructor for class mro.util.measures.MeasureGroup
MeasureGroup(MeasureGroup) - Constructor for class mro.util.measures.MeasureGroup
  Copy Constructor.
measureGroupStack - Variable in class mro.util.measures.MeasuresHandler
measureMeasureGroupSorter - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasureGroupPanel
measureMeasureGroupSorter - Variable in class mro.util.measures.dialog.MeasuresPanel
measureName - Variable in class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
MeasureNameConflictException - Exception in mro.util.measures
  Thrown when adding a new Measure with a name matching one already in the Measures.
MeasureNameConflictException() - Constructor for exception mro.util.measures.MeasureNameConflictException
MeasureNameConflictException(String) - Constructor for exception mro.util.measures.MeasureNameConflictException
measureNames - Variable in class mro.util.experimentation.ResultTableStructureHandler
MeasureNotFoundException - Exception in mro.util.measures
  Thrown when a user tries to set a Measure (see `Measures#setMeasure`) that is not in the `Measures`.
MeasureNotFoundException() - Constructor for exception mro.util.measures.MeasureNotFoundException
measures - Variable in class infomat.mro.ExperimentResultGenerator.Info
measures - Variable in class mro.util.experimentation.Result
measures - Variable in class mro.util.measures.dialog.MeasuresPanel
Measures - Class in mro.util.measures
Measures(String) - Constructor for class mro.util.measures.Measures
  A constructor.
Measures(MeasureGroup) - Constructor for class mro.util.measures.Measures
  Shallow copy constructor.
measures - Variable in class mro.util.measures.MeasuresHandler
measures - Variable in class mro.util.measures.MultiMeasure
MeasuresFrame - Class in mro.util.measures.dialog
  Test Class.
MeasuresFrame(Measures) - Constructor for class mro.util.measures.dialog.MeasuresFrame
MEASURESFRAME_PREFERRED_SIZE - Static variable in class mro.util.measures.dialog.MeasuresFrame
MeasuresHandler - Class in mro.util.measures
  Class used for XML-parsing of `Measures`-objects.
MeasuresHandler() - Constructor for class mro.util.measures.MeasuresHandler
MeasureSorter - Class in infomat.vectorspace
  A class for sorting of IObjectGroupings in order of associated Measure:s.
MeasureSorter() - Constructor for class infomat.vectorspace.MeasureSorter
MeasureSorter.GroupMeasureComparator - Class in infomat.vectorspace
MeasureSorter.GroupMeasureComparator(HashMap<IObjectGroup, Measure>) - Constructor for class infomat.vectorspace.MeasureSorter.GroupMeasureComparator
measuresPanel - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
MeasuresPanel - Class in mro.util.measures.dialog
  A JPanel that displays a Measures.
MeasuresPanel(String) - Constructor for class mro.util.measures.dialog.MeasuresPanel
MeasuresPanel() - Constructor for class mro.util.measures.dialog.MeasuresPanel
MeasuresPanel(Measures, String) - Constructor for class mro.util.measures.dialog.MeasuresPanel
MeasuresPanel(Measures) - Constructor for class mro.util.measures.dialog.MeasuresPanel
measuresPanel - Variable in class mro.util.measures.dialog.MeasuresPanel.FilePanel
measuresPanel - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasureGroupPanel
measuresPanel - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
MeasuresPanel.FilePanel - Class in mro.util.measures.dialog
MeasuresPanel.FilePanel(MeasuresPanel) - Constructor for class mro.util.measures.dialog.MeasuresPanel.FilePanel
MeasuresPanel.InfoPanel - Class in mro.util.measures.dialog
MeasuresPanel.InfoPanel() - Constructor for class mro.util.measures.dialog.MeasuresPanel.InfoPanel
MeasuresPanel.LeftLabel - Class in mro.util.measures.dialog
MeasuresPanel.LeftLabel(String) - Constructor for class mro.util.measures.dialog.MeasuresPanel.LeftLabel
MeasuresPanel.MeasureGroupPanel - Class in mro.util.measures.dialog
MeasuresPanel.MeasureGroupPanel(MeasureGroup, MeasuresPanel) - Constructor for class mro.util.measures.dialog.MeasuresPanel.MeasureGroupPanel
MeasuresPanel.MeasureMeasureGroupSorter - Class in mro.util.measures.dialog
MeasuresPanel.MeasureMeasureGroupSorter() - Constructor for class mro.util.measures.dialog.MeasuresPanel.MeasureMeasureGroupSorter
MeasuresPanel.MeasurePanel - Class in mro.util.measures.dialog
MeasuresPanel.MeasurePanel(Measure, MeasuresPanel) - Constructor for class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
MeasuresPanel.SmallButton - Class in mro.util.measures.dialog
MeasuresPanel.SmallButton(String) - Constructor for class mro.util.measures.dialog.MeasuresPanel.SmallButton
MeasureStampComparator - Class in mro.util.measures
MeasureStampComparator() - Constructor for class mro.util.measures.MeasureStampComparator
measureVector - Variable in class mro.util.measures.AverageMeasure
  The vector of Measure:s.
measureVector - Variable in class mro.util.measures.MeasureGroup
  The vector of Measures in the order the user wants it.
menu - Variable in class infomat.view.MainWindow
Menu - Class in infomat.view.menu
  Responsible for the menu.
Menu(MainWindow, InfomatModel, ToolbarController, InfomatView) - Constructor for class infomat.view.menu.Menu
  Create the menu.
menuClick(String) - Method in class infomat.view.menu.ToolbarController
  Simulate a button press (from the menu)
menuPress(String) - Method in class infomat.view.menu.ToolbarView
merge(IObjectGroup, IObjectGroup) - Method in class infomat.algorithms.grouping.GroupMerger
merge(Vector<IObjectGroup>) - Method in class infomat.algorithms.grouping.GroupMerger
middlePanel - Variable in class infomat.view.pixel.PixelFrame
minOpacity - Variable in class infomat.view.grouping.settings.GroupingSettings
minOpacity - Variable in class infomat.view.InfomatView
minSim - Static variable in class infomat.algorithms.reduction.Reducer
minSlider - Variable in class infomat.view.grouping.settings.OpacityPanel
model - Variable in class infomat.view.algorithms.AlgorithmFrame
model - Variable in class infomat.view.algorithms.LabelFrame
model - Variable in class infomat.view.algorithms.MatrixFilterFrame
model - Variable in class infomat.view.algorithms.MatrixWeightingFrame
model - Variable in class infomat.view.group.GroupFrame.GroupInfo
model - Variable in class infomat.view.group.GroupFrame
model - Variable in class infomat.view.grouping.GroupingPanel
model - Variable in class infomat.view.grouping.GroupingSelectionPanel
model - Variable in class infomat.view.grouping.settings.GroupingFilePanel
model - Variable in class infomat.view.grouping.settings.GroupingSettingsManager
model - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
model - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
model - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
model - Variable in class infomat.view.grouping.settings.OpacityPanel
model - Variable in class infomat.view.info.DimensionInfoPanel
model - Variable in class infomat.view.info.PixelInfoFrame
model - Variable in class infomat.view.info.PixelInfoPanel
model - Variable in class infomat.view.InfomatOverview
model - Variable in class infomat.view.InfomatPropertiesFrame
model - Variable in class infomat.view.InfomatView
model - Variable in class infomat.view.menu.ToolbarView
model - Variable in class infomat.view.pixel.PixelFrame
model - Variable in class infomat.view.pixel.PixelPanel
model - Variable in class infomat.view.SessionPanel
model - Variable in class infomat.view.similarity.SimilarityFrame
model - Variable in class infomat.view.similarity.SimilarityManager
model - Variable in class infomat.view.similarity.SimilarityPanel
model - Variable in class infomat.view.sorter.SorterFrame
model - Variable in class infomat.view.sorter.SorterPanel.GroupingInfo
model - Variable in class infomat.view.sorter.SorterPanel
model - Variable in class infomat.view.sorter.SorterPanel.Ordering
model - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
model - Variable in class infomat.view.tools.MatrixSummaryFrame
model - Variable in class infomat.view.tools.StoplistFrame
model - Variable in class infomat.view.vector.IVectorIndexPanel
model - Variable in class infomat.view.vector.IVectorPanel
MoreMath - Class in mro.util
  A class with some extra mathematical functions.
MoreMath() - Constructor for class mro.util.MoreMath
MOUSE_CHANGE_STATE_DRAG - Static variable in class infomat.view.InfomatView
MOUSE_CHANGE_STATE_NONE - Static variable in class infomat.view.InfomatView
MOUSE_CHANGE_STATE_ZOOM - Static variable in class infomat.view.InfomatView
MOUSE_CHANGE_STATE_ZOOMAREA - Static variable in class infomat.view.InfomatView
MOUSE_REMOVE_COLUMNS - Static variable in class infomat.view.InfomatView
MOUSE_REMOVE_ROWS - Static variable in class infomat.view.InfomatView
MOUSE_SELECT_PIXEL - Static variable in class infomat.view.InfomatView
mouseClicked(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mouseDragged(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mouseEntered(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mouseExited(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mouseMoved(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mousePressed(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mouseReleased(MouseEvent) - Method in class infomat.view.picture.SparsePicture
mouseState - Variable in class infomat.view.InfomatView
MOVE - Static variable in class infomat.view.menu.Menu
mro - package mro
  "mro" is a package of various tools.
mro.util - package mro.util
mro.util.doublehashmap - package mro.util.doublehashmap
mro.util.experimentation - package mro.util.experimentation
mro.util.measures - package mro.util.measures
mro.util.measures.dialog - package mro.util.measures.dialog
mro.util.properties - package mro.util.properties
mro.util.properties.dialog - package mro.util.properties.dialog
MultiMeasure - Class in mro.util.measures
  A multi measure: Several values.
MultiMeasure() - Constructor for class mro.util.measures.MultiMeasure
MultiMeasure(String, double, String) - Constructor for class mro.util.measures.MultiMeasure
MultiMeasure(MultiMeasure) - Constructor for class mro.util.measures.MultiMeasure
  Copy Constructor.
MultiMeasure(String, double, String, IObjectGroup) - Constructor for class mro.util.measures.MultiMeasure
  To read from XML files...
multiply(T, Float) - Method in class infomat.vectorspace.vector.IVector
  Multiplies this value with the value for the T.
multiply(Float) - Method in class infomat.vectorspace.vector.IVector
  Uses the multiply(T, Float) method - multiplies all elements by the the provided value.
mutualInformation() - Method in class infomat.evaluation.ExtrinsicEvaluation
mySessionPanel - Variable in class infomat.view.MainWindow

## N

name - Variable in class mro.util.measures.Measure
name - Variable in class mro.util.measures.MeasuresHandler
name - Variable in class mro.util.properties.PropertiesHandler
name - Variable in class mro.util.properties.Property
nameAlgMap - Static variable in class infomat.view.algorithms.AlgorithmSelectionPanel
nameButton - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
nameButton - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
nameGroupingMap - Variable in class infomat.vectorspace.IObjectSet
nameMeasureGroupMap - Variable in class mro.util.measures.MeasureGroup
  MeasureGroup:s.
nameMeasureMap - Variable in class mro.util.measures.MeasureGroup
  All Measure:s.
namePropertyGroupMap - Variable in class mro.util.properties.Properties
  PropertyGroup:s.
namePropertyMap - Variable in class mro.util.properties.Properties
  All Property:s.
nameSimMap - Variable in class infomat.view.similarity.SimilarityPanel
nameWeighterMap - Static variable in class infomat.view.algorithms.MatrixWeightingSelectionPanel
NeedsIMatrix - Interface in infomat.algorithms.grouping
  NeedsIMatrix
NeedsIMatrixDimension - Interface in infomat.algorithms.grouping
  NeedsIMatrixDimension
NeedsISimilarity - Interface in infomat.algorithms.grouping
  NeedsISimilarity
NeedsSparseISimilarity - Interface in infomat.algorithms.grouping
  NeedsSparseISimilarity
NegationClusterer - Class in infomat.mro
  NOT WORKING IN VERSION 080828 Simple class for running clustering without the GUI.
NegationClusterer() - Constructor for class infomat.mro.NegationClusterer
Negator - Class in infomat.mro
Negator() - Constructor for class infomat.mro.Negator
newColorButton - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
newGroupColorMap - Variable in class infomat.view.grouping.settings.GroupingColoring
newValueField - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
no_pos_and_neg - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
noCols(int, int) - Method in class infomat.view.picture.Guide
noGroup - Static variable in class infomat.view.info.DimensionInfoPanel
none - Static variable in class infomat.view.evaluation.EvaluationSelectionPanel
none - Static variable in class infomat.view.grouping.GroupingSelectionPanel
noObject - Static variable in class infomat.view.info.DimensionInfoPanel
noRect(int, int) - Method in class infomat.view.picture.Guide
normalize(float[]) - Method in class infomat.bridges.jsdm.JSDMWrapper
normalize(IMatrix) - Method in class infomat.vectorspace.Normalizer
normalize - Variable in class infomat.vectorspace.similarity.SparseDotSimilarity
normalize() - Method in class infomat.vectorspace.vector.IVector
normalizeMatrix(IMatrix, boolean) - Static method in class infomat.vectorspace.Normalizer
  Normalizes the rows or columns of the matrix.
normalizeMatrix(IMatrix, boolean) - Static method in class infomat.vectorspace.weighting.TFIDFWeighter
  Normalizes the rows or columns of the matrix.
Normalizer - Class in infomat.vectorspace
  For normalizeing rows or columns of a IMatrix.
Normalizer() - Constructor for class infomat.vectorspace.Normalizer
Normalizer(Properties) - Constructor for class infomat.vectorspace.Normalizer
normDifference(AverageMeasure) - Method in class mro.util.measures.AverageMeasure
  Constructs a AverageMeasure containing the normalized difference between this and an other AverageMeasure for each Measure in the Vector.
normDifference(Measure) - Method in class mro.util.measures.Measure
  Constructs a Measure containing the normalized difference between this and an other Measure.
normEntropy(IObjectGroup) - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
normMutualInformation() - Method in class infomat.evaluation.ExtrinsicEvaluation
normOB - Variable in class infomat.view.vector.IVectorPanel
noRows(int, int) - Method in class infomat.view.picture.Guide
noText - Variable in class infomat.view.menu.ToolbarView.InfoPanel
noText - Variable in class infomat.view.menu.ToolbarView
notIn(IObjectGroup) - Method in class infomat.vectorspace.IObjectGroup
  Returns a IObjectGroup with the IObject:s in this that is not in the specified IObjectGroup.
number - Variable in class infomat.view.vector.IVectorIndexPanel
number - Variable in class mro.util.experimentation.RelativeEntry
numberOfIMatrixColumns - Static variable in class infomat.view.picture.SparsePixel
numberOfIMatrixRows - Static variable in class infomat.view.picture.SparsePixel
numberOfIObjectGroups() - Method in class infomat.vectorspace.IObjectGrouping
  Returns the the number of IObjectGroup:s in the IObjectGrouping.
numberOfIObjects() - Method in class infomat.vectorspace.IObjectGroup
  Returns the number of IObjects in the IObjectGroup.
numberOfIOsNotInSDM - Variable in class infomat.bridges.jsdm.JSDMWrapper
numberOfLabels - Variable in class infomat.bridges.jsdm.JSDMWrapper
numberOfSharedIObjects(IObjectGroup) - Method in class infomat.vectorspace.IObjectGroup
  Returns the number of IObjects that are shared between the this and another IObjectGroup.

## O

objectGlobalWeightMap - Variable in class infomat.vectorspace.IMatrix
objectIdentification - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
objectLabel - Variable in class infomat.view.info.DimensionInfoPanel
objectOrderIndexMap - Variable in class infomat.vectorspace.IObjectGroup
objectOrderValueMap - Variable in class infomat.algorithms.labeling.IObjectFloatMapEntryComparator
objectOrderValueMap - Variable in class infomat.algorithms.labeling.IObjectWeightComparator
objectOrderValueMap - Variable in class infomat.vectorspace.IObjectGroup
objectValueMap - Variable in class infomat.vectorspace.vector.IVector
  The sparse representation, a map from T:s to Float values.
objectValueMap - Variable in class infomat.vectorspace.vector.IVector.TValueComparator
offsetX - Variable in class infomat.view.picture.SparsePartPicture
offsetY - Variable in class infomat.view.picture.SparsePartPicture
oldColoring - Variable in class infomat.view.grouping.settings.GroupingSettings
oldHEIGHT - Variable in class infomat.view.InfomatOverview
oldHEIGHT - Variable in class infomat.view.InfomatView
OldIVectorIO - Class in infomat.io
  For loading and saving a IVector.
OldIVectorIO() - Constructor for class infomat.io.OldIVectorIO
OldIVectorIO.IVectorOfIObjectsHandler - Class in infomat.io
OldIVectorIO.IVectorOfIObjectsHandler(IObjectGroup) - Constructor for class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
oldMaxOpacity - Variable in class infomat.view.grouping.settings.GroupingSettings
oldMaxOpacity - Variable in class infomat.view.InfomatView
oldMinOpacity - Variable in class infomat.view.grouping.settings.GroupingSettings
oldMinOpacity - Variable in class infomat.view.InfomatView
oldOpacity - Variable in class infomat.view.InfomatView
oldWIDTH - Variable in class infomat.view.InfomatOverview
oldWIDTH - Variable in class infomat.view.InfomatView
oldX - Variable in class infomat.view.picture.Guide
oldY - Variable in class infomat.view.picture.Guide
one - Variable in class infomat.view.info.PixelInfoPanel.CellsPanel
oneButton - Variable in class infomat.view.info.PixelInfoPanel.CellsPanel
oneClustering(String, GroupingAlgorithm, Weighter, IMatrix) - Method in class infomat.mro.Experimentator
oneClustering(String, GroupingAlgorithm, Weighter, IMatrix) - Method in class infomat.mro.ExperimentatorNumberOfWords
oneClustering(String, GroupingAlgorithm, Weighter, IMatrix) - Method in class infomat.mro.ExperimentatorReductionReduction
oneIter(IObjectGrouping, SparseISimilarity) - Method in class infomat.algorithms.grouping.KMeans
  Implemented for the "Clustering" course of GSLT 2008.
oneReductionExperiment(String, IObjectGrouping, LabelReducer, Labeler, GroupingAlgorithm, String, long) - Method in class infomat.mro.Experimentator
oneReductionExperiment(String, IObjectGrouping, LabelReducer, Labeler, GroupingAlgorithm, String, long) - Method in class infomat.mro.ExperimentatorNumberOfWords
oneReductionExperiment(String, IObjectGrouping, LabelReducer, Labeler, GroupingAlgorithm, String, long) - Method in class infomat.mro.ExperimentatorReductionReduction
opacity - Variable in class infomat.view.InfomatView
opacity - Variable in class infomat.view.picture.SparsePixel
OPACITY_MAX - Static variable in class infomat.view.grouping.settings.OpacitySlider
OPACITY_MIN - Static variable in class infomat.view.grouping.settings.OpacitySlider
opacityChanged() - Method in class infomat.view.grouping.settings.GroupingSettings
opacityChanged - Variable in class infomat.view.InfomatOverview
opacityChanged() - Method in class infomat.view.InfomatView
OpacityPanel - Class in infomat.view.grouping.settings
OpacityPanel(InfomatModel, InfomatView, GroupingSettings, Dimension) - Constructor for class infomat.view.grouping.settings.OpacityPanel
OpacitySlider - Class in infomat.view.grouping.settings
OpacitySlider(boolean, int, OpacityPanel) - Constructor for class infomat.view.grouping.settings.OpacitySlider
opacitySlider - Variable in class infomat.view.grouping.settings.OpacitySlider
openCorpusFile(File) - Method in class infomat.view.InfomatModel
  Opens a Corpus File.
OPENCORPUSFILE - Static variable in class infomat.view.menu.Menu
openDocumentGroupingFile(File) - Method in class infomat.view.InfomatModel
  Opens a Document Grouping File.
OPENDOCUMENTGROUPINGFILE - Static variable in class infomat.view.menu.Menu
openIMatrixFile(File) - Method in class infomat.view.InfomatModel
openIObjectGroupingFile(boolean, File) - Method in class infomat.view.InfomatModel
OPENMATRIXFILE - Static variable in class infomat.view.menu.Menu
openRIFile(File) - Method in class infomat.view.InfomatModel
OPENRIFILE - Static variable in class infomat.view.menu.Menu
openTokenFileForTextWord(File) - Method in class infomat.view.InfomatModel
  Opens a Token File to read Texts and Words.
OPENTOKENFILETEXTWORD - Static variable in class infomat.view.menu.Menu
order - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
order - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
orderable - Variable in class infomat.view.vector.IVectorPanel
orderApply - Variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
ordered - Variable in class infomat.vectorspace.IObjectGroup
orderSelectionPanel - Variable in class infomat.view.vector.IVectorPanel
originalCategorization - Variable in class infomat.mro.Experimentator
originalCategorization - Variable in class infomat.mro.ExperimentatorNumberOfWords
originalCategorization - Variable in class infomat.mro.ExperimentatorReductionReduction
originalMatrix - Variable in class infomat.Experimentator
originalMatrix - Variable in class infomat.mro.Experimentator
originalMatrix - Variable in class infomat.mro.ExperimentatorNumberOfWords
originalMatrix - Variable in class infomat.mro.ExperimentatorReductionReduction
originalOB - Variable in class infomat.view.vector.IVectorPanel
originalVec - Variable in class infomat.view.vector.IVectorPanel
origoX - Variable in class infomat.view.picture.SparsePartPicture
origoY - Variable in class infomat.view.picture.SparsePartPicture
overshoootForSecond(String, String) - Static method in class mro.util.PathHelper
  Used by infomat.Experimentator
overview - Variable in class infomat.view.InfomatView
OVERVIEW_PREFERRED_SIZE - Static variable in class infomat.view.InfomatOverview
OVERVIEWONOFF - Static variable in class infomat.view.menu.Menu
overviewPicture - Variable in class infomat.view.picture.SparsePicture
owner - Variable in class mro.util.properties.PropertiesHandler
ownerClassName - Variable in class mro.util.UniqueIdentifier
  A String containing the full name of the class of the owner object.
ownerIdentifier - Variable in class mro.util.properties.Properties
  This identifier identifies the owning object.
ownerIdentifier - Variable in class mro.util.properties.PropertiesHandler

## P

p - Variable in class infomat.view.tools.MatrixSummaryFrame.PartInfo
paint(Graphics) - Method in class infomat.view.algorithms.AlgorithmFrame
paint(Graphics) - Method in class infomat.view.similarity.SimilarityFrame
paint(Graphics) - Method in class infomat.view.tools.StoplistFrame
paintComponent(Graphics) - Method in class infomat.view.algorithms.AlgorithmSelectionPanel
paintComponent(Graphics) - Method in class infomat.view.algorithms.MatrixWeightingSelectionPanel
paintComponent(Graphics) - Method in class infomat.view.grouping.GroupingPanel
paintComponent(Graphics) - Method in class infomat.view.grouping.GroupingSelectionPanel
paintComponent(Graphics) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
paintComponent(Graphics) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.Groups
paintComponent(Graphics) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel
paintComponent(Graphics) - Method in class infomat.view.info.DimensionInfoPanel
paintComponent(Graphics) - Method in class infomat.view.info.PixelInfoPanel.CellPanel
paintComponent(Graphics) - Method in class infomat.view.info.PixelInfoPanel.CellsPanel
paintComponent(Graphics) - Method in class infomat.view.info.PixelInfoPanel
paintComponent(Graphics) - Method in class infomat.view.InfomatView
paintComponent(Graphics) - Method in class infomat.view.menu.ToolbarView.InfoPanel
paintComponent(Graphics) - Method in class infomat.view.picture.SparsePicture
paintComponent(Graphics) - Method in class infomat.view.pixel.PixelPanel
paintComponent(Graphics) - Method in class infomat.view.sorter.SorterPanel
paintcomponent(Graphics) - Method in class infomat.view.tools.EvaluationFrame.EvaluationPanel
paintcomponent(Graphics) - Method in class mro.util.measures.dialog.MeasuresPanel.InfoPanel
paintcomponent(Graphics) - Method in class mro.util.measures.dialog.MeasuresPanel.MeasureGroupPanel
paintcomponent(Graphics) - Method in class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
paintcomponent(Graphics) - Method in class mro.util.measures.dialog.MeasuresPanel
paintcomponent(Graphics) - Method in class mro.util.properties.dialog.PropertiesPanel.InfoPanel
paintcomponent(Graphics) - Method in class mro.util.properties.dialog.PropertiesPanel
paintcomponent(Graphics) - Method in class mro.util.properties.dialog.PropertiesPanel.PropertyGroupPanel
paintcomponent(Graphics) - Method in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
pane - Variable in class infomat.view.pixel.PixelPanel
panelDimension - Static variable in class infomat.view.grouping.settings.GroupingSettingsPanel
panelDimension - Static variable in class infomat.view.sorter.SorterPanel
panelVec - Variable in class infomat.view.vector.IVectorPanel
parametersChanged() - Method in class infomat.view.InfomatOverview
parametersChanged() - Method in class infomat.view.InfomatView
parent - Variable in class infomat.vectorspace.IObjectGroupNode
partPictureArray - Variable in class infomat.view.picture.SparsePicture
parts - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
PathEntry - Class in mro.util.experimentation
  Path Table.
PathEntry() - Constructor for class mro.util.experimentation.PathEntry
pathEntry - Variable in class mro.util.experimentation.ResultTableStructureHandler
PathHelper - Class in mro.util
  Converts filenames to a format using the current file separator.
PathHelper() - Constructor for class mro.util.PathHelper
pathInfoMap - Variable in class infomat.mro.ExperimentResultGenerator.InfoPool
pathMatrix1 - Variable in class infomat.mro.ExperimentResultGenerator
pathMatrix2 - Variable in class infomat.mro.ExperimentResultGenerator
pathMatrix3 - Variable in class infomat.mro.ExperimentResultGenerator
pathMatrix4 - Variable in class infomat.mro.ExperimentResultGenerator
pathResultMap - Variable in class mro.util.experimentation.ResultPool
paths - Variable in class mro.util.experimentation.PathEntry
paths - Variable in class mro.util.experimentation.ResultTableStructureHandler
PathTable - Class in mro.util.experimentation
  Path Table.
PathTable() - Constructor for class mro.util.experimentation.PathTable
pathTable - Variable in class mro.util.experimentation.ResultTableStructure
pathTable - Variable in class mro.util.experimentation.ResultTableStructureHandler
pf - Variable in class infomat.view.pixel.PixelFrame.ControlPanel
pf - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
pf - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
pf - Variable in class infomat.view.pixel.PixelFrame.SelectionPanel
pg - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasureGroupPanel
pg - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyGroupPanel
pixelFrame - Variable in class infomat.view.InfomatModel
PixelFrame - Class in infomat.view.pixel
  A tool for displaying IMatrixCells, and IObject:s for rows and columns.
PixelFrame(InfomatModel, InfomatView) - Constructor for class infomat.view.pixel.PixelFrame
PixelFrame.ControlPanel - Class in infomat.view.pixel
  Controls what panels are visable.
PixelFrame.ControlPanel(PixelFrame) - Constructor for class infomat.view.pixel.PixelFrame.ControlPanel
PixelFrame.GatherPanel - Class in infomat.view.pixel
  Controls which pixels are gathered.
PixelFrame.GatherPanel(PixelFrame) - Constructor for class infomat.view.pixel.PixelFrame.GatherPanel
PixelFrame.RemovePanel - Class in infomat.view.pixel
  Used to remove what is gathered.
PixelFrame.RemovePanel(PixelFrame) - Constructor for class infomat.view.pixel.PixelFrame.RemovePanel
PixelFrame.SelectionPanel - Class in infomat.view.pixel
  Controls how the pixels are selected.
PixelFrame.SelectionPanel(PixelFrame) - Constructor for class infomat.view.pixel.PixelFrame.SelectionPanel
PixelInfoFrame - Class in infomat.view.info
PixelInfoFrame(String, InfomatModel, InfomatView) - Constructor for class infomat.view.info.PixelInfoFrame
PIXELINFOFRAME_PREFERRED_SIZE - Static variable in class infomat.view.info.PixelInfoFrame
PIXELINFOONOFF - Static variable in class infomat.view.menu.Menu
pixelInfoPanel - Variable in class infomat.view.info.PixelInfoFrame
PixelInfoPanel - Class in infomat.view.info
PixelInfoPanel(InfomatModel, InfomatView) - Constructor for class infomat.view.info.PixelInfoPanel
PixelInfoPanel.CellPanel - Class in infomat.view.info
PixelInfoPanel.CellPanel() - Constructor for class infomat.view.info.PixelInfoPanel.CellPanel
PixelInfoPanel.CellPanel(IMatrixCell) - Constructor for class infomat.view.info.PixelInfoPanel.CellPanel
PixelInfoPanel.CellsPanel - Class in infomat.view.info
PixelInfoPanel.CellsPanel() - Constructor for class infomat.view.info.PixelInfoPanel.CellsPanel
pixelMap - Variable in class infomat.view.picture.SparsePartPicture
PixelPanel - Class in infomat.view.pixel
  Presents IMatrixCell:s, and IObjects for rows and columns.
PixelPanel(InfomatModel, InfomatView, boolean, boolean, boolean) - Constructor for class infomat.view.pixel.PixelPanel
PIXELPANEL_PREFERRED_SIZE - Static variable in class infomat.view.pixel.PixelFrame
PIXELSELECTION - Static variable in class infomat.view.menu.Menu
PIXELSELECTION - Static variable in class infomat.view.menu.ToolbarController
place - Variable in class mro.util.experimentation.RelativeEntry
pool - Variable in class infomat.Clusterer
poolForMatrix - Variable in class infomat.Experimentator
poolsDifferentInPreprocessing(PropertiesPool, PropertiesPool) - Method in class infomat.Experimentator
pp - Variable in class infomat.mro.Experimentator
pp - Variable in class infomat.mro.ExperimentatorNumberOfWords
pp - Variable in class infomat.mro.ExperimentatorReductionReduction
pp - Variable in class infomat.mro.ExperimentResultGenerator.Info
pp - Variable in class infomat.mro.ExperimentResultGenerator
pp - Variable in class mro.util.experimentation.ExperimentResultGenerator
pp - Variable in class mro.util.experimentation.Result
PREFERRED_SESSION_DIMENSION - Static variable in class infomat.view.SessionPanel
preprocess(PropertiesPool) - Method in class infomat.Experimentator
press(String) - Method in class infomat.view.menu.ToolbarView
press() - Method in class infomat.view.util.AlternatingButton
pressed - Variable in class infomat.view.menu.ToolbarView
print() - Method in class infomat.vectorspace.vector.IVector
  For debugging.
print() - Method in class infomat.view.grouping.settings.GroupingSettingsManager
  For debugging.
print(String[]) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
print(int[]) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
print() - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
print() - Method in class mro.util.experimentation.PathTable
print() - Method in class mro.util.experimentation.Table
print() - Method in class mro.util.measures.AverageMeasure
print() - Method in class mro.util.measures.AverageMeasureGroup
print(Object) - Method in class mro.util.TracePrinter
printBeginTextSize(PrintWriter, int) - Static method in class mro.util.LatexHelper
printClassNames() - Method in class mro.util.properties.PropertiesPool
  For debugging purposes.
printColorParamters() - Method in class infomat.view.picture.SparsePixel
printDTD(PrintWriter) - Method in class infomat.io.IMatrixIO
printDTD(PrintWriter) - Method in class infomat.io.IObjectGroupingIO
printDTD(PrintWriter) - Method in class infomat.io.IVectorIO
printDTD(PrintWriter) - Method in class infomat.io.OldIVectorIO
printDTD(PrintWriter) - Static method in class mro.util.experimentation.MeasureAbbreviationTable
  Prints the complete DTD of a Table-XML-file to a `PrintWriter`.
printDTD(PrintWriter) - Static method in class mro.util.experimentation.PathTable
  Prints the complete DTD of a Table-XML-file to a `PrintWriter`.
printDTD(PrintWriter) - Static method in class mro.util.experimentation.RelativeTable
  Prints the complete DTD of a Table-XML-file to a `PrintWriter`.
printDTD(PrintWriter) - Static method in class mro.util.experimentation.ResultTableStructure
  Prints the complete DTD of a ResultTableStructure-XML-file to a `PrintWriter`.
printDTD(PrintWriter) - Static method in class mro.util.experimentation.Table
  Prints the complete DTD of a Table-XML-file to a `PrintWriter`.
printDTD(PrintWriter) - Static method in class mro.util.measures.Measures
  Prints the complete DTD of a measures-XML-file to a `PrintWriter`.
printDTD(PrintWriter) - Static method in class mro.util.properties.Properties
  Prints the complete DTD of a Properties-XML-file to a `PrintWriter`.
printEndTextSize(PrintWriter, int) - Static method in class mro.util.LatexHelper
Printer - Class in mro.util
Printer() - Constructor for class mro.util.Printer
printGroup(IObjectGroup) - Method in class infomat.algorithms.grouping.GroupingAlgorithm
  For debuggin purposes!
printGroupDTD(PrintWriter) - Static method in class infomat.io.textresult.IObjectGroupTextResult
printGroupingDTD(PrintWriter) - Method in class infomat.io.textresult.IObjectGroupingTextResult
printGroupingXSL(PrintWriter) - Method in class infomat.io.textresult.IObjectGroupingTextResult
  Prints a basic XSL-file for IObjectGrouping XML-files to a `PrintWriter`.
printGroupNamesAndSizes() - Method in class infomat.vectorspace.IObjectGrouping
  For debugging purposes.
printGroupSizes(Vector<IObjectGroup>) - Method in class infomat.algorithms.grouping.GroupingAlgorithm
  For debuggin purposes!
printGroupSizes(Vector<IObjectGroupNode>) - Method in class infomat.algorithms.grouping.TopDownSplitter
  For debuggin purposes!
printGroupSizes() - Method in class infomat.vectorspace.IObjectGrouping
  For debugging purposes.
printGroupSizesInIterations - Variable in class infomat.algorithms.grouping.GroupingAlgorithm
printGroupSizesInIterations - Variable in class infomat.algorithms.grouping.TopDownSplitter
printGroupsObjects(int) - Method in class infomat.vectorspace.IObjectGrouping
  For debugging purposes.
printGroupXSL(PrintWriter) - Method in class infomat.io.textresult.IObjectGroupTextResult
  Prints a basic XSL-file for IObjectGroup XML-files to a `PrintWriter`.
printHierarchy() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
printHierarchy(IObjectGroupNode, String, String) - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
printHLine(PrintWriter) - Static method in class mro.util.LatexHelper
printHTMLEnd(PrintWriter) - Static method in class mro.util.HTMLHelper
printHTMLHead(PrintWriter, String) - Static method in class mro.util.HTMLHelper
printHTMLLink(PrintWriter, String, String) - Static method in class mro.util.HTMLHelper
printIMatrixBoundaries() - Method in class infomat.view.InfomatView
printIObjectGroupingXSLReference(PrintWriter) - Method in class infomat.io.textresult.IObjectGroupingTextResult
  Prints a reference to the Properties-XSL-file to a `PrintWriter`.
printIObjectGroupXSLReference(PrintWriter, String) - Method in class infomat.io.textresult.IObjectGroupTextResult
  Prints a reference to the Properties-XSL-file to a `PrintWriter`.
printLabel(PrintWriter, ILabel) - Static method in class infomat.algorithms.labeling.Labeler
printLabeling(IObjectGrouping, HashMap<IObjectGroup, ILabel>) - Static method in class infomat.algorithms.labeling.Labeler
printLabeling(PrintWriter, IObjectGrouping, HashMap<IObjectGroup, ILabel>, String) - Static method in class infomat.algorithms.labeling.Labeler
printLatexEnd(PrintWriter) - Static method in class mro.util.LatexHelper
printLatexHead(PrintWriter) - Static method in class mro.util.LatexHelper
println(Object) - Method in class mro.util.TracePrinter
println() - Method in class mro.util.TracePrinter
printMatrix(IMatrix) - Static method in class infomat.mro.NegationClusterer
printMatrix(IMatrix) - Static method in class infomat.mro.WTClusterer
printMatrix(IMatrix) - Static method in class infomat.mro.WTExperimentator
printMatrixEnd(PrintWriter) - Static method in class mro.util.MatlabHelper
printMatrixHead(PrintWriter, String) - Static method in class mro.util.MatlabHelper
printMatrixRow(PrintWriter, Vector<String>) - Static method in class mro.util.MatlabHelper
printMeasureMatrixIntoLatexTable(PrintWriter, String[], Measure[][]) - Method in class infomat.mro.ExperimentResultGenerator
printmeasuresXSLReference(PrintWriter) - Static method in class mro.util.measures.Measures
  Prints a reference to the measures-XSL-file to a `PrintWriter`.
printOn - Variable in class infomat.view.algorithms.MatrixFilterFrame
printOn - Variable in class infomat.view.algorithms.MatrixWeightingFrame
printOn - Variable in class infomat.view.menu.Menu
printOut() - Method in class mro.util.measures.Measures
printPartDescriptionIVectorXSL(PrintWriter, String) - Static method in class infomat.io.textresult.IVectorTextResult
printPartDTD(PrintWriter) - Method in class infomat.io.IVectorIO
printPartDTD(PrintWriter) - Method in class infomat.io.OldIVectorIO
printPartDTD(PrintWriter) - Static method in class mro.util.experimentation.MeasureAbbreviationTable
  Prints the DTD of a Table-XML-file to a `PrintWriter`.
printPartDTD(PrintWriter) - Static method in class mro.util.experimentation.PathTable
  Prints the DTD of a Table-XML-file to a `PrintWriter`.
printPartDTD(PrintWriter) - Static method in class mro.util.experimentation.RelativeTable
  Prints the DTD of a Table-XML-file to a `PrintWriter`.
printPartDTD(PrintWriter) - Static method in class mro.util.experimentation.Table
  Prints the DTD of a Table-XML-file to a `PrintWriter`.
printPartDTD(PrintWriter) - Static method in class mro.util.measures.Measures
  Prints the DTD of a measures-XML-file to a `PrintWriter`.
printPartDTD(PrintWriter) - Static method in class mro.util.properties.Properties
  Prints the DTD of a Properties-XML-file to a `PrintWriter`.
printPartDTD(PrintWriter) - Method in class mro.util.UniqueIdentifier
printPartDTD(PrintWriter) - Method in interface mro.util.XMLPartIO
  Prints the DTD for a UniqueIndentifier.
printPartGroupDTD(PrintWriter) - Static method in class infomat.io.textresult.IObjectGroupTextResult
printPartIObjectGroupIVectorXSL(PrintWriter, String) - Static method in class infomat.io.textresult.IVectorTextResult
printPartIVectorDTD(PrintWriter) - Static method in class infomat.io.textresult.IVectorTextResult
printPartOfGroupingXSL(PrintWriter, String) - Static method in class infomat.io.textresult.IObjectGroupTextResult
printPartRepresentationIVectorXSL(PrintWriter, String) - Static method in class infomat.io.textresult.IVectorTextResult
printPartXML(PrintWriter) - Method in class mro.util.experimentation.MeasureAbbreviationTable
printPartXML(PrintWriter) - Method in class mro.util.experimentation.PathTable
printPartXML(PrintWriter) - Method in class mro.util.experimentation.RelativeEntry
printPartXML(PrintWriter) - Method in class mro.util.experimentation.RelativeTable
printPartXML(PrintWriter) - Method in class mro.util.experimentation.ResultTableStructure
printPartXML(PrintWriter) - Method in class mro.util.experimentation.Table
printPartXML(PrintWriter) - Method in class mro.util.measures.Measures
printPartXML(PrintWriter) - Method in class mro.util.properties.Properties
printPartXML(PrintWriter) - Method in class mro.util.UniqueIdentifier
  Prints this UniqueIdentifier to a PrintWriter as a part of a larger XML-file following the DTD in `UniqueIdentifier.printPartDTD(java.io.PrintWriter)`.
printPartXML(PrintWriter) - Method in interface mro.util.XMLPartIO
  Prints to a PrintWriter as a part of a larger XML-file following the DTD in `XMLPartIO.printPartDTD(java.io.PrintWriter)`.
printPropertiesXSLReference(PrintWriter) - Static method in class mro.util.properties.Properties
  Prints a reference to the Properties-XSL-file to a `PrintWriter`.
printResultTableStructureXSLReference(PrintWriter) - Static method in class mro.util.experimentation.ResultTableStructure
  Prints a reference to the ResultTableStructure-XSL-file to a `PrintWriter`.
printSet(HashSet<IObject>) - Method in class infomat.mro.synlex.SynlexGrouper
printSpecialIntoLatexTable(PrintWriter, String[], Measure[][], Measure[][], Measure[][], Measure[][], Measure[][]) - Method in class infomat.mro.ExperimentResultGenerator
printStringVector(Vector<String>) - Method in class mro.util.experimentation.ResultTable
printTableEnd(PrintWriter, String, String) - Static method in class mro.util.LatexHelper
printTableEnd(PrintWriter, String, String, int) - Static method in class mro.util.LatexHelper
printTableEnd(PrintWriter) - Static method in class mro.util.LatexHelper
printTableEnd(PrintWriter, int) - Static method in class mro.util.LatexHelper
printTableHead(PrintWriter, Vector<String>, boolean) - Static method in class mro.util.LatexHelper
printTableHead(PrintWriter, int) - Static method in class mro.util.LatexHelper
printTableHead(PrintWriter, int, int) - Static method in class mro.util.LatexHelper
printTablePartHorizontalLine(PrintWriter, String) - Static method in class mro.util.LatexHelper
printTableRow(PrintWriter, Vector<String>) - Static method in class mro.util.LatexHelper
printTableTable(PrintWriter, IObjectGroup, Vector<ILabel>) - Static method in class infomat.mro.LabelExamples
printTableXSLReference(PrintWriter) - Static method in class mro.util.experimentation.MeasureAbbreviationTable
  Prints a reference to the Table-XSL-file to a `PrintWriter`.
printTableXSLReference(PrintWriter) - Static method in class mro.util.experimentation.PathTable
  Prints a reference to the Table-XSL-file to a `PrintWriter`.
printTableXSLReference(PrintWriter) - Static method in class mro.util.experimentation.RelativeTable
  Prints a reference to the Table-XSL-file to a `PrintWriter`.
printTableXSLReference(PrintWriter) - Static method in class mro.util.experimentation.Table
  Prints a reference to the Table-XSL-file to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.experimentation.MeasureAbbreviationTable
  Prints the Table to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.experimentation.PathEntry
printXML(PrintWriter) - Method in class mro.util.experimentation.PathTable
  Prints the Table to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.experimentation.RelativeTable
  Prints the Table to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.experimentation.ResultTableStructure
  Prints the ResultTableStructure to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.experimentation.Table
  Prints the Table to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.measures.AverageMeasure
printXML(PrintWriter) - Method in class mro.util.measures.AverageMeasureGroup
printXML(PrintWriter) - Method in class mro.util.measures.Measure
printXML(PrintWriter) - Method in class mro.util.measures.MeasureGroup
printXML(PrintWriter) - Method in class mro.util.measures.Measures
  Prints the measures to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.measures.MultiMeasure
printXML(PrintWriter) - Method in class mro.util.properties.Properties
  Prints the Properties to a `PrintWriter`.
printXML(PrintWriter) - Method in class mro.util.properties.Property
printXML(PrintWriter) - Method in class mro.util.properties.PropertyGroup
printXML(PrintWriter) - Method in class mro.util.properties.PropertyValueDescription
printXMLHead(PrintWriter) - Static method in class mro.util.XMLHelper
printXSL(PrintWriter) - Method in class mro.util.experimentation.MeasureAbbreviationTable
  Prints a basic XSL-file for Table XML-files to a `PrintWriter`.
printXSL(PrintWriter) - Method in class mro.util.experimentation.PathTable
  Prints a basic XSL-file for Table XML-files to a `PrintWriter`.
printXSL(PrintWriter) - Method in class mro.util.experimentation.RelativeTable
  Prints a basic XSL-file for Table XML-files to a `PrintWriter`.
printXSL(PrintWriter) - Method in class mro.util.experimentation.ResultTableStructure
  Prints a basic XSL-file for ResultTableStructure XML-files to a `PrintWriter`.
printXSL(PrintWriter) - Method in class mro.util.experimentation.Table
  Prints a basic XSL-file for Table XML-files to a `PrintWriter`.
printXSL(PrintWriter) - Method in class mro.util.measures.Measures
  Prints a basic XSL-file for measures XML-files to a `PrintWriter`.
printXSL(PrintWriter) - Method in class mro.util.properties.Properties
  Prints a basic XSL-file for Properties XML-files to a `PrintWriter`.
progressBar - Variable in class infomat.view.ProgressFrame
progressFrame - Variable in class infomat.view.InfomatModel
ProgressFrame - Class in infomat.view
ProgressFrame(String) - Constructor for class infomat.view.ProgressFrame
progressIndicator - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
PROGRESSMFRAME_PREFERRED_SIZE - Variable in class infomat.view.ProgressFrame
projectAlongColumns(IMatrix, SparseISimilarity, IObjectGrouping) - Method in class infomat.vectorspace.IMatrixProjector
projectAlongColumns(IMatrix, HashMap<IObject, HashMap<IObjectGroup, Float>>, IObjectGrouping) - Method in class infomat.vectorspace.IMatrixProjector
projectIObjectsOnGroups(IObjectGrouping, ISimilarity) - Static method in class infomat.vectorspace.SoftIObjectGrouping
projectOnBestColumnGroups(IMatrix, SparseISimilarity, IObjectGrouping) - Method in class infomat.vectorspace.IMatrixProjector
  A very bad idea.
properties - Variable in class infomat.algorithms.grouping.GroupingAlgorithm
properties - Variable in class infomat.algorithms.grouping.GroupMerger
properties - Variable in class infomat.algorithms.grouping.TopDownSplitter
properties - Variable in class infomat.algorithms.labeling.Labeler
properties - Variable in class infomat.algorithms.labeling.LabelReducer
properties - Variable in class infomat.algorithms.reduction.SizeReducer
properties - Variable in class infomat.bridges.jsdm.JSDMWrapper
properties - Variable in class infomat.bridges.jsdm.RIIO
properties - Variable in class infomat.Clusterer
properties - Variable in class infomat.evaluation.Evaluation
properties - Variable in class infomat.evaluation.ExtrinsicEvaluation
properties - Variable in class infomat.evaluation.IntrinsicEvaluation
properties - Variable in class infomat.evaluation.MatrixMeasures
properties - Variable in class infomat.Experimentator
properties - Variable in class infomat.io.IObjectGroupingIO
properties - Variable in class infomat.io.textresult.IObjectGroupingTextResult
properties - Variable in class infomat.io.textresult.IObjectGroupTextResult
properties - Variable in class infomat.mro.Experimentator
properties - Variable in class infomat.mro.ExperimentatorNumberOfWords
properties - Variable in class infomat.mro.ExperimentatorReductionReduction
properties - Variable in class infomat.mro.ExperimentResultGenerator
properties - Variable in class infomat.mro.FileConverter
properties - Variable in class infomat.vectorspace.IMatrixCellFilter
properties - Variable in class infomat.vectorspace.Normalizer
properties - Variable in class infomat.vectorspace.similarity.ISimilarity
properties - Variable in class infomat.vectorspace.Stoplist
properties - Variable in class infomat.vectorspace.weighting.Weighter
properties - Variable in class infomat.view.InfomatModel
PROPERTIES - Static variable in class infomat.view.menu.Menu
properties - Variable in class mro.util.experimentation.ExperimentResultGenerator
properties - Variable in class mro.util.properties.dialog.DummyClass
Properties - Class in mro.util.properties
  This class works a bit like java.util.Properties.
Properties(String) - Constructor for class mro.util.properties.Properties
  A constructor.
Properties(String, String) - Constructor for class mro.util.properties.Properties
  A constructor that creates a UniqueIdentifier with the specified owner class name.
Properties(String, Object) - Constructor for class mro.util.properties.Properties
  A constructor that creates a UniqueIdentifier from the object that is passed along and lets it be the owner identifier.
Properties(String, UniqueIdentifier) - Constructor for class mro.util.properties.Properties
  A constructor.
Properties(Properties) - Constructor for class mro.util.properties.Properties
  Copy constructor.
properties - Variable in class mro.util.properties.PropertiesHandler
properties - Variable in class mro.util.properties.PropertyGroup
propertiesDirectory - Variable in class infomat.Experimentator
propertiesFrame - Variable in class infomat.view.InfomatModel
PropertiesFrame - Class in mro.util.properties.dialog
  Test Class.
PropertiesFrame(Properties) - Constructor for class mro.util.properties.dialog.PropertiesFrame
PropertiesFrame(HasProperties) - Constructor for class mro.util.properties.dialog.PropertiesFrame
PROPERTIESFRAME_PREFERRED_SIZE - Static variable in class infomat.view.InfomatPropertiesFrame
PROPERTIESFRAME_PREFERRED_SIZE - Static variable in class mro.util.properties.dialog.PropertiesFrame
PropertiesHandler - Class in mro.util.properties
  Class used for XML-parsing of `Properties`-objects.
PropertiesHandler() - Constructor for class mro.util.properties.PropertiesHandler
propertiesName - Variable in class mro.util.properties.Properties
  The name of the Properties.
propertiesPanel - Variable in class infomat.view.similarity.SimilarityPanel
propertiesPanel - Variable in class infomat.view.tools.StoplistFrame
PropertiesPanel - Class in mro.util.properties.dialog
  A JPanel that displyas the Property:s of a HasProperty-object.
PropertiesPanel(HasProperties, String) - Constructor for class mro.util.properties.dialog.PropertiesPanel
PropertiesPanel(HasProperties) - Constructor for class mro.util.properties.dialog.PropertiesPanel
propertiesPanel - Variable in class mro.util.properties.dialog.PropertiesPanel.FilePanel
propertiesPanel - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyGroupPanel
propertiesPanel - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
PropertiesPanel.FilePanel - Class in mro.util.properties.dialog
PropertiesPanel.FilePanel(PropertiesPanel) - Constructor for class mro.util.properties.dialog.PropertiesPanel.FilePanel
PropertiesPanel.InfoPanel - Class in mro.util.properties.dialog
PropertiesPanel.InfoPanel() - Constructor for class mro.util.properties.dialog.PropertiesPanel.InfoPanel
PropertiesPanel.LeftLabel - Class in mro.util.properties.dialog
PropertiesPanel.LeftLabel(String) - Constructor for class mro.util.properties.dialog.PropertiesPanel.LeftLabel
PropertiesPanel.PropertyGroupPanel - Class in mro.util.properties.dialog
PropertiesPanel.PropertyGroupPanel(PropertyGroup, PropertiesPanel) - Constructor for class mro.util.properties.dialog.PropertiesPanel.PropertyGroupPanel
PropertiesPanel.PropertyPanel - Class in mro.util.properties.dialog
PropertiesPanel.PropertyPanel(Property, PropertiesPanel) - Constructor for class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
PropertiesPanel.PropertyPropertyGroupSorter - Class in mro.util.properties.dialog
PropertiesPanel.PropertyPropertyGroupSorter() - Constructor for class mro.util.properties.dialog.PropertiesPanel.PropertyPropertyGroupSorter
PropertiesPanel.PropertyValueDescriptionPanel - Class in mro.util.properties.dialog
PropertiesPanel.PropertyValueDescriptionPanel(PropertyValueDescription) - Constructor for class mro.util.properties.dialog.PropertiesPanel.PropertyValueDescriptionPanel
PropertiesPanel.SmallButton - Class in mro.util.properties.dialog
PropertiesPanel.SmallButton(String) - Constructor for class mro.util.properties.dialog.PropertiesPanel.SmallButton
PropertiesPool - Class in mro.util.properties
  A class that handles several Properties.
PropertiesPool() - Constructor for class mro.util.properties.PropertiesPool
PropertiesPool(PropertiesPool) - Constructor for class mro.util.properties.PropertiesPool
property - Variable in class mro.util.properties.dialog.PropertiesPanel.InfoPanel
property - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
Property - Class in mro.util.properties
  A property of some kind with description.
Property() - Constructor for class mro.util.properties.Property
Property(String, Object, String) - Constructor for class mro.util.properties.Property
Property(String, String, String) - Constructor for class mro.util.properties.Property
Property(String, int, String) - Constructor for class mro.util.properties.Property
Property(String, double, String) - Constructor for class mro.util.properties.Property
Property(String, boolean, String) - Constructor for class mro.util.properties.Property
Property(Property) - Constructor for class mro.util.properties.Property
  Copy Constructor.
Property(String, String, boolean, String) - Constructor for class mro.util.properties.Property
  To read from XML files...
PropertyAverage - Class in mro.util.properties
  The average of a property of some kind with description.
PropertyAverage() - Constructor for class mro.util.properties.PropertyAverage
PropertyAverage(Vector) - Constructor for class mro.util.properties.PropertyAverage
propertyBorderColor - Variable in class mro.util.properties.dialog.PropertiesPanel
propertyDescription - Variable in class mro.util.properties.Property
PropertyGroup - Class in mro.util.properties
PropertyGroup() - Constructor for class mro.util.properties.PropertyGroup
PropertyGroup(String) - Constructor for class mro.util.properties.PropertyGroup
PropertyGroup(PropertyGroup) - Constructor for class mro.util.properties.PropertyGroup
  Copy Constructor.
propertyGroupName - Variable in class mro.util.properties.PropertyGroup
propertyGroupStack - Variable in class mro.util.properties.PropertiesHandler
PropertyInterface - Interface in mro.util.properties
PropertyNameConflictException - Exception in mro.util.properties
  Thrown when adding a new Property with a name matching one already in the Properties.
PropertyNameConflictException() - Constructor for exception mro.util.properties.PropertyNameConflictException
PropertyNotFoundException - Exception in mro.util.properties
  Thrown when a user tries to set a Property (see `Properties.setProperty(java.lang.String, java.lang.Object)`) that is not in the `Properties`.
PropertyNotFoundException() - Constructor for exception mro.util.properties.PropertyNotFoundException
propertyPropertyGroupSorter - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyGroupPanel
propertyPropertyGroupSorter - Variable in class mro.util.properties.dialog.PropertiesPanel
PropertyValueDescription - Class in mro.util.properties
PropertyValueDescription(Object, String) - Constructor for class mro.util.properties.PropertyValueDescription
PropertyValueDescription(boolean, String) - Constructor for class mro.util.properties.PropertyValueDescription
PropertyValueDescription(int, String) - Constructor for class mro.util.properties.PropertyValueDescription
propertyVector - Variable in class mro.util.properties.Properties
  The vector in the order the user wants it.
purged - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
purgeGroupingsToSet() - Method in class infomat.vectorspace.IObjectSet
  Removed IObject:s from the IObjectGrouping:s that are not in the IObjectSet.
purgeGroupingToSet(IObjectSet) - Method in class infomat.vectorspace.IObjectGrouping
  Removes IObject:s are not in the IObjectSet.
purgeMatrix() - Method in class infomat.view.InfomatModel
PURGEMATRIX - Static variable in class infomat.view.menu.Menu
purgeMatrixToCurrentGroupings() - Method in class infomat.vectorspace.IMatrix
  Removes all IObjects that's not in the current IObjectGroupings from the sets and all their IObjectGroupings.
purgeSetToCurrentGrouping() - Method in class infomat.vectorspace.IObjectSet
  Removes all IObjects that's not in the current IObjectGrouping from the set and all its IObjectGroupings.
purity() - Method in class infomat.evaluation.ExtrinsicEvaluation
purity(IObjectGroup) - Method in class infomat.evaluation.ExtrinsicGroupEvaluation
put(T, Float) - Method in class infomat.vectorspace.vector.IVector
  Sets the value for t to be f.
put(IVector<T>) - Method in class infomat.vectorspace.vector.IVector
  Uses the put(T, Float) method.
put(HashMap<T, Float>) - Method in class infomat.vectorspace.vector.IVector
  Uses the add(T, Float) method.
put(Object, Object, Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Adds a Object "value" indexed with the Object:s "first" and "second"
put(F, S, V) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Adds a Object "value" indexed with the Object:s "first" and "second"
put(F, S, V) - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
  Adds a Object "value" indexed with the Object:s "first" and "second".
put(int, int, PathEntry) - Method in class mro.util.experimentation.PathTable
put(int, int, V) - Method in class mro.util.experimentation.Table
putAll() - Method in class infomat.view.algorithms.AlgorithmFrame
putAll() - Method in class infomat.view.algorithms.MatrixWeightingFrame
putAll() - Method in class infomat.view.group.GroupFrame.GroupInfo
putAll() - Method in class infomat.view.group.GroupFrame
putAll() - Method in class infomat.view.grouping.GroupingPanel
putAll() - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
putAll() - Method in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupingInfo
putAll() - Method in class infomat.view.grouping.settings.GroupingSettingsPanel
putAll() - Method in class infomat.view.info.DimensionInfoPanel
putAll() - Method in class infomat.view.info.PixelInfoFrame
putAll() - Method in class infomat.view.info.PixelInfoPanel.CellsPanel
putAll() - Method in class infomat.view.info.PixelInfoPanel
putAll() - Method in class infomat.view.InfomatPropertiesFrame
putAll() - Method in class infomat.view.menu.ToolbarView
putAll() - Method in class infomat.view.pixel.PixelFrame
putAll() - Method in class infomat.view.SessionPanel
putAll() - Method in class infomat.view.similarity.SimilarityFrame
putAll() - Method in class infomat.view.similarity.SimilarityPanel
putAll() - Method in class infomat.view.sorter.SorterPanel.GroupInfo
putAll() - Method in class infomat.view.sorter.SorterPanel.GroupingInfo
putAll() - Method in class infomat.view.sorter.SorterPanel
putAll() - Method in class infomat.view.tools.EvaluationFrame.EvaluationPanel
putAll() - Method in class infomat.view.tools.StoplistFrame
putAll() - Method in class infomat.view.vector.IVectorIndexPanel
putAll() - Method in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
putAll() - Method in class infomat.view.vector.IVectorPanel
putAll() - Method in class mro.util.measures.dialog.MeasuresPanel.InfoPanel
putAll() - Method in class mro.util.measures.dialog.MeasuresPanel.MeasureGroupPanel
putAll() - Method in class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
putAll() - Method in class mro.util.measures.dialog.MeasuresPanel
putAll() - Method in class mro.util.properties.dialog.PropertiesPanel.InfoPanel
putAll() - Method in class mro.util.properties.dialog.PropertiesPanel.PropertyGroupPanel
putAll() - Method in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
putAll() - Method in class mro.util.properties.dialog.PropertiesPanel
putAllFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
putAllSelectedToGathered() - Method in class infomat.view.pixel.PixelFrame
putCellsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
putColumnColorPixel(SparsePixel) - Method in class infomat.view.picture.SparsePartPicture
putColumnsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
putIntoFirstMap(F, S, V, HashMap<F, HashMap<S, V>>) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Convenience method, for putting objects into a HashMap of HashMap:s.
putIntoMap(Object, Object, Object, HashMap) - Method in class mro.util.doublehashmap.DoubleHashMap
  Convenience method, for putting objects into a HashMap of HashMap:s.
putIntoSecondMap(S, F, V, HashMap<S, HashMap<F, V>>) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Convenience method, for putting objects into a HashMap of HashMap:s.
putNewGrouping(IObjectGrouping) - Method in class infomat.view.grouping.settings.GroupingSettingsManager
putPath(String) - Method in class mro.util.experimentation.PathEntry
putPixel(SparsePixel) - Method in class infomat.view.picture.SparsePartPicture
  Adds a new SparsePixel to the picture.
putRowsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
putSelectedCellsToGathered() - Method in class infomat.view.pixel.PixelFrame
putSelectedColumnsToGathered() - Method in class infomat.view.pixel.PixelFrame
putSelectedRowsToGathered() - Method in class infomat.view.pixel.PixelFrame
pvdDescription - Variable in class mro.util.properties.PropertiesHandler
pvdValue - Variable in class mro.util.properties.PropertiesHandler

## R

randClusterer - Variable in class infomat.algorithms.matrix.IMatrixRandomSplitter
RandomClusterer - Class in infomat.algorithms.grouping
  KMeans
RandomClusterer() - Constructor for class infomat.algorithms.grouping.RandomClusterer
RandomClusterer(Properties) - Constructor for class infomat.algorithms.grouping.RandomClusterer
randomClusteringNumber - Static variable in class infomat.algorithms.grouping.RandomClusterer
randomDegree - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
randomOrder() - Method in class infomat.vectorspace.IObjectGroup
  Reorders the IObjects randomly.
randomSeed - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
readAllMeasuresInDirectory(File) - Method in class mro.util.measures.Averagor
readAndWrite(File, String) - Method in class mro.util.measures.Averagor
readFile(String) - Method in class infomat.io.IVectorStringIO
  Reads strings from a text file with one string per row.
readFile(File) - Method in class infomat.io.IVectorStringIO
readFile - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
readFile - Variable in class infomat.vectorspace.CorpusIO
readFile(String) - Method in class infomat.vectorspace.Stoplist
  Reads strings from a text file with one string per row.
readFile(File) - Method in class infomat.vectorspace.Stoplist
readFiles() - Method in class infomat.mro.Experimentator
readFiles() - Method in class infomat.mro.ExperimentatorNumberOfWords
readFiles() - Method in class infomat.mro.ExperimentatorReductionReduction
readFiles() - Method in class infomat.mro.FileConverter
recolor() - Method in class infomat.view.grouping.settings.GroupingColoring
recolor(boolean, GroupingColoring) - Method in class infomat.view.picture.SparsePixel
recurseExperimentDirectory(File, PropertiesPool) - Method in class infomat.Experimentator
recurseExperimentPath(File) - Method in class infomat.mro.Experimentator
recurseExperimentPath(File) - Method in class infomat.mro.ExperimentatorNumberOfWords
recurseExperimentPath(File) - Method in class infomat.mro.ExperimentatorReductionReduction
recurseFile(File) - Method in class infomat.io.TextDirectoryReader
recurseResultPath(File) - Method in class infomat.mro.ExperimentResultGenerator
recurseResultPath(File) - Method in class mro.util.experimentation.ExperimentResultGenerator
recursivelyAddMeasureGroupForAveraging(MeasureGroup, MeasureGroup) - Method in class mro.util.measures.Averagor
recursivelyAddMeasuresForAveraging(Measures, Measures) - Method in class mro.util.measures.Averagor
recursivelyAddPropertiesInPropertyVector(Vector) - Method in class mro.util.properties.Properties
  Used by the `Properties.addProperty(mro.util.properties.Property)`-method.
reduceGroup(IObjectGroup, SparseISimilarity, IVector<IVectorIndex>) - Method in class infomat.algorithms.reduction.Reducer
reduceGroupByLabelCentroid(IObjectGroup, ILabel, SparseISimilarity) - Method in class infomat.algorithms.labeling.LabelReducer
  Makes a new (reduced) IObjectGroup by considering the ILabel a centroid and removing those IObjects with similarity higer than a parameter.
reduceGroupBySharedLabelObjects(IObjectGroup, ILabel, IMatrix, boolean) - Method in class infomat.algorithms.labeling.LabelReducer
  Makes a new (reduced) IObjectGroup that consist of those IObject:s that contain the IObject:s of the ILabel in their representation.
reduceGroupingByLabeling(IObjectGrouping, HashMap<IObjectGroup, ILabel>, IMatrix, SparseISimilarity) - Method in class infomat.algorithms.labeling.LabelReducer
  Returns two IObjectGrouping:s: 0) the reduced grouping, 1) the rest grouping.
reduceGroupingToSizeOfOtherGroupingInOrder(IObjectGrouping, IObjectGrouping, IMatrix) - Static method in class infomat.algorithms.labeling.SizeReducer
  Note: does not handle missing zero-sized groups!!!
reduceGroupingToSizeOfOtherGroupingInOrder(IObjectGrouping, IObjectGrouping, IMatrix) - Static method in class infomat.algorithms.reduction.SizeReducer
  Note: does not handle missing zero-sized groups!!!
reduceGroupingToSizeOfOtherGroupingRandomly(IObjectGrouping, IObjectGrouping, IMatrix) - Static method in class infomat.algorithms.labeling.SizeReducer
  Note: does not handle missing zero-sized groups!!!
reduceGroupingToSizeOfOtherGroupingRandomly(IObjectGrouping, IObjectGrouping, IMatrix) - Static method in class infomat.algorithms.reduction.SizeReducer
  Note: does not handle missing zero-sized groups!!!
reduceGroupToSizeOfOtherGroupInOrder(IObjectGroup, IObjectGroup) - Static method in class infomat.algorithms.labeling.SizeReducer
  Makes a new IObjectGroup that consists of the top IObject:s of "iog".
reduceGroupToSizeOfOtherGroupInOrder(IObjectGroup, IObjectGroup) - Static method in class infomat.algorithms.reduction.SizeReducer
  Makes a new IObjectGroup that consists of the top IObject:s of "iog".
reduceGroupToSizeOfOtherGroupRandomly(IObjectGroup, IObjectGroup) - Static method in class infomat.algorithms.labeling.SizeReducer
  Makes a new IObjectGroup that consists of the top IObject:s of "iog".
reduceGroupToSizeOfOtherGroupRandomly(IObjectGroup, IObjectGroup) - Static method in class infomat.algorithms.reduction.SizeReducer
  Makes a new IObjectGroup that consists of the top IObject:s of "iog".
Reducer - Class in infomat.algorithms.reduction
Reducer() - Constructor for class infomat.algorithms.reduction.Reducer
referenceGrouping - Variable in class infomat.Experimentator
refGrouping - Variable in class infomat.evaluation.Evaluation
refGrouping - Variable in class infomat.evaluation.ExtrinsicEvaluation
refGrouping - Variable in class infomat.evaluation.ExtrinsicGroupEvaluation
refGrouping - Variable in class infomat.evaluation.MatrixMeasures
refGroupingDesignation - Static variable in class infomat.evaluation.Evaluation
refGroupingDesignation - Variable in class infomat.evaluation.MatrixMeasures
related - Variable in class mro.util.properties.PropertiesHandler
relatedIdentifiers - Variable in class mro.util.properties.Properties
  The related identifiers.
relatedIdentifiers - Variable in class mro.util.properties.PropertiesHandler
relative(Result, String) - Method in class mro.util.experimentation.Result
  Returns the relative result of this compared to the specified Result.
relative(MeasureGroup) - Method in class mro.util.measures.MeasureGroup
RelativeClusterer - Class in infomat.algorithms.grouping
  The similarity should be the one for the other dimension!
RelativeClusterer() - Constructor for class infomat.algorithms.grouping.RelativeClusterer
relativeClusteringNumber - Static variable in class infomat.algorithms.grouping.RelativeClusterer
RelativeEntry - Class in mro.util.experimentation
  RelativeEntry.
RelativeEntry() - Constructor for class mro.util.experimentation.RelativeEntry
RelativeLabeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups, the first in the centroid.
RelativeLabeler(IMatrix, boolean) - Constructor for class infomat.algorithms.labeling.RelativeLabeler
RelativeLabeler(IMatrix, boolean, Properties) - Constructor for class infomat.algorithms.labeling.RelativeLabeler
RelativeTable - Class in mro.util.experimentation
  RelativeTable.
RelativeTable() - Constructor for class mro.util.experimentation.RelativeTable
relativeTable - Variable in class mro.util.experimentation.ResultTableStructure
relativeTable - Variable in class mro.util.experimentation.ResultTableStructureHandler
relativeVector - Variable in class mro.util.experimentation.RelativeTable
rele - Variable in class mro.util.experimentation.ResultTableStructureHandler
relKind - Variable in class mro.util.experimentation.RelativeEntry
relNumber - Variable in class mro.util.experimentation.RelativeEntry
rememberX - Variable in class infomat.view.picture.Guide
rememberY - Variable in class infomat.view.picture.Guide
remove(IObject) - Method in class infomat.vectorspace.IObjectGroup
  Removes the IObject.
remove(IVector<IObject>) - Method in class infomat.vectorspace.IObjectGroup
remove(IObjectGroup) - Method in class infomat.vectorspace.IObjectGrouping
  Removes a IObjectGroup.
remove(IObject) - Method in class infomat.vectorspace.IObjectGrouping
  Removes the IObject from all the IObjectGroup:s of the grouping.
remove(IVector<IObject>) - Method in class infomat.vectorspace.IObjectGrouping
remove(int, int) - Method in class infomat.vectorspace.IObjectGrouping
  Removes and returns the IObjects in the range given, the range within the vector "ordered".
remove(IObject) - Method in class infomat.vectorspace.IObjectSet
  Removes a IObject.
remove(T) - Method in class infomat.vectorspace.vector.IVector
remove(Object, Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Removes the Object with the indexes.
remove(F, S) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Removes the Object with the indexes.
REMOVE_COLUMNS - Static variable in class infomat.view.menu.Menu
REMOVE_COLUMNS - Static variable in class infomat.view.menu.ToolbarController
REMOVE_ROWS - Static variable in class infomat.view.menu.Menu
REMOVE_ROWS - Static variable in class infomat.view.menu.ToolbarController
removeAll() - Method in class infomat.vectorspace.IObjectGroup
removeAll() - Method in class infomat.vectorspace.IObjectSet
removeAll() - Method in class infomat.vectorspace.vector.IVector
removeAllCells() - Method in class infomat.vectorspace.IMatrix
  Revmove all IMatrixCell from the IMatrix.
removeAllFirst(Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Removes all Objects with the specified "first" index.
removeAllFirst(F) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Removes all Objects with the specified "first" index.
removeAllGathered() - Method in class infomat.view.pixel.PixelFrame
removeAllGroups() - Method in class infomat.vectorspace.IObjectGrouping
  Removes all IObjectGroups.
removeAllSecond(Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Removes all Objects with the specified "second" index.
removeAllSecond(S) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Removes all Objects with the specified "second" index.
removeB - Variable in class infomat.view.pixel.PixelFrame.ControlPanel
removeCell(IMatrixCell) - Method in class infomat.vectorspace.IMatrix
  Removes a IMatrixCell from the IMatrix.
removeCells(IVector<IMatrixCell>) - Method in class infomat.vectorspace.IMatrix
removeColsOrRows(boolean, int, int, int, IObjectSet, IMatrix) - Method in class infomat.vectorspace.IMatrixCellFilter
  Helper method.
removeColumns(int, int) - Method in class infomat.view.InfomatModel
removeEmptyGroups() - Method in class infomat.vectorspace.IObjectGrouping
  Removes all empty IObjectGroup:s.
removeFromFirstMap(F, S, HashMap<F, HashMap<S, V>>) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Convenience method, for removing objects in a HashMap of HashMap:s.
removeFromMap(Object, Object, HashMap) - Method in class mro.util.doublehashmap.DoubleHashMap
  Convenience method, for removing objects in a HashMap of HashMap:s.
removeFromSecondMap(S, F, HashMap<S, HashMap<F, V>>) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Convenience method, for removing objects in a HashMap of HashMap:s.
removeGatheredCells() - Method in class infomat.view.pixel.PixelFrame
removeGatheredColumns() - Method in class infomat.view.pixel.PixelFrame
removeGatheredRows() - Method in class infomat.view.pixel.PixelFrame
removeGrouping(IObjectGrouping) - Method in class infomat.vectorspace.IObjectSet
  Removes an IObjectGrouping.
removeIObjectsInStoplist(IMatrix, boolean) - Method in class infomat.vectorspace.Stoplist
  Applies #constructStopIObjectsFromStopStrings and #removeStopIObjects().
removeLastPart(String) - Static method in class mro.util.PathHelper
  Used by infomat.algorithms.LocationGrouper
removeObjectsNotIn(IObjectGroup) - Method in class infomat.vectorspace.IObjectGroup
  Removes IObject:s that are not in the given IObjectGroup.
removeObjectsNotIn(IObjectGroup) - Method in class infomat.vectorspace.IObjectGrouping
  Removes IObject:s that are not in the given IObjectGroup.
removeObjsFromVec(Vector<T>, IVector<T>) - Method in class infomat.view.vector.IVectorPanel
removePanel - Variable in class infomat.view.pixel.PixelFrame
removeProperty(String) - Method in class mro.util.properties.Properties
  Removes the Property with the specified name.
removePropertyRecursively(String, Vector<Property>) - Method in class mro.util.properties.Properties
removeRows(int, int) - Method in class infomat.view.InfomatModel
removeStopIObjects(IMatrix, boolean) - Method in class infomat.vectorspace.Stoplist
  Removes the IObject:s in the stoplist from the matrix along the specified dimension.
removeWorstNode(Vector<IObjectGroupNode>) - Method in class infomat.algorithms.grouping.TopDownSplitter
reorder(int[]) - Method in class infomat.vectorspace.IObjectGrouping
  Reorders the groups according to a mapping in the form of an int array.
RESET - Static variable in class infomat.view.menu.Menu
reset() - Method in class infomat.view.picture.Guide
resetButton - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
resetColors() - Method in class infomat.view.grouping.settings.GroupingColoring
resetGroupings() - Method in class infomat.view.pixel.PixelPanel
resetImage() - Method in class infomat.view.InfomatModel
  Reset settings about zoom and position in the image.
resetImage() - Method in class infomat.view.InfomatView
  Reset zoom.
resetIMatrix() - Method in class infomat.view.InfomatModel
  Resets the matrix, i.e.
resetOpacities() - Method in class infomat.view.grouping.settings.GroupingSettings
resetSimilarities() - Method in class infomat.view.similarity.SimilarityPanel
resort() - Method in class infomat.vectorspace.IMatrix
  Resorts the IObjectSet:s "rows" and "cols" according to their current IObjectGroupings.
resortIMatrix() - Method in class infomat.view.InfomatModel
restrictionGroup - Variable in class infomat.view.vector.IVectorPanel
Result - Class in mro.util.experimentation
  Class for storing info for each directory.
Result(String, Measures, PropertiesPool, String, String) - Constructor for class mro.util.experimentation.Result
Result(Result, String, String) - Constructor for class mro.util.experimentation.Result
  Shallow copy constructor.
resultFile - Variable in class infomat.io.textresult.IObjectGroupingTextResult
resultMap - Variable in class mro.util.experimentation.ResultTable
resultPathMap - Variable in class mro.util.experimentation.ResultPool
resultPool - Variable in class mro.util.experimentation.ExperimentResultGenerator
ResultPool - Class in mro.util.experimentation
  Class for storing result info for each directory.
ResultPool() - Constructor for class mro.util.experimentation.ResultPool
resultPool - Variable in class mro.util.experimentation.ResultTable
ResultTable - Class in mro.util.experimentation
  Result Table.
ResultTable(ResultTableStructure, ResultPool) - Constructor for class mro.util.experimentation.ResultTable
ResultTableStructure - Class in mro.util.experimentation
  A class for handling xml tables.
ResultTableStructure() - Constructor for class mro.util.experimentation.ResultTableStructure
resultTableStructure - Variable in class mro.util.experimentation.ResultTableStructureHandler
ResultTableStructureHandler - Class in mro.util.experimentation
  Class used for XML-parsing of `ResultTableStructure`-objects.
ResultTableStructureHandler() - Constructor for class mro.util.experimentation.ResultTableStructureHandler
resultVector - Variable in class mro.util.experimentation.ResultPool
rgb - Variable in class infomat.view.picture.SparsePixel
RIClusterer - Class in infomat.bridges.jsdm
  Simple stupid class for clustering RI:s from jsdm.
RIClusterer() - Constructor for class infomat.bridges.jsdm.RIClusterer
rid - Variable in class infomat.io.IMatrixIO.IMatrixHandler
rightPanel - Variable in class infomat.view.pixel.PixelFrame
rightWindowSize - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
RIIO - Class in infomat.bridges.jsdm
  For importing a Random Index from Martin Hassel's package java sdm (jsdm) see: http://www.nada.kth.se/~xmartin/
  This is a naive implementation.
RIIO() - Constructor for class infomat.bridges.jsdm.RIIO
RIIO(Properties) - Constructor for class infomat.bridges.jsdm.RIIO
RIIO.RIHandler - Class in infomat.bridges.jsdm
RIIO.RIHandler(IMatrix, int, int) - Constructor for class infomat.bridges.jsdm.RIIO.RIHandler
RIWrapperClusterer - Class in infomat.bridges.jsdm
  Simple stupic class for clustering RI:s from jsdm.
RIWrapperClusterer() - Constructor for class infomat.bridges.jsdm.RIWrapperClusterer
rmB - Variable in class infomat.view.vector.IVectorPanel
root - Variable in class infomat.vectorspace.HierarchicalIObjectGrouping
rootIObjectGroupNodes - Variable in class infomat.vectorspace.HierarchicalIObjectGrouping
Round - Class in mro.util
  Round is a class for rounding doubles of to significant figures.
Round() - Constructor for class mro.util.Round
round(double, String) - Static method in class mro.util.Round
  Not very good.
round(double, long) - Static method in class mro.util.Round
  The method round(double, long) takes a double to round and a long specifying how many significan figures one wants and returns the figure rounded that way.
roundDecimals(double, long) - Static method in class mro.util.Round
  roundDecimals rounds the double to a number of decimals
roundDecimalsToTrimmedString(double, long) - Static method in class mro.util.Round
roundFloatToNumOfDecimals - Static variable in class mro.util.measures.Measure
roundSmall(double, long) - Static method in class mro.util.Round
roundString - Variable in class mro.util.experimentation.PathEntry
roundString - Variable in class mro.util.experimentation.Result
roundToTrimmedString(double, String) - Static method in class mro.util.Round
  Not very good.
roundValue - Static variable in class mro.util.measures.Measure
row - Variable in class infomat.algorithms.grouping.RelativeClusterer
row - Variable in class infomat.algorithms.labeling.RelativeLabeler
row - Variable in class infomat.algorithms.labeling.WeightRankingBoostLabeler
row - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
row - Variable in class infomat.io.IObjectGroupingIO
row - Variable in class infomat.vectorspace.similarity.SparseDotSimilarity
row - Variable in class infomat.vectorspace.similarity.SparseOverlapSimilarity
row - Variable in class infomat.view.group.GroupFrame.GroupInfo
row - Variable in class infomat.view.group.GroupFrame
row - Variable in class infomat.view.grouping.settings.GroupingFilePanel
row - Variable in class infomat.view.grouping.settings.GroupingSettings
row - Variable in class infomat.view.grouping.settings.GroupingSettingsManager
row - Variable in class infomat.view.info.DimensionInfoPanel
row - Variable in class infomat.view.similarity.SimilarityPanel
row() - Method in class infomat.view.tools.EvaluationFrame.EvaluationPanel
row - Variable in class infomat.view.tools.MatrixSummaryFrame.PartInfo
row() - Method in class infomat.view.tools.StoplistFrame
row - Variable in class mro.util.experimentation.ResultTableStructureHandler
row - Variable in class mro.util.experimentation.TableHandler
ROW_DIMENSION_NAME - Static variable in class infomat.view.InfomatView
rowB - Variable in class infomat.view.pixel.PixelFrame.GatherPanel
rowB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
rowColoring - Variable in class infomat.view.grouping.settings.GroupingColoring
rowColorPanel - Variable in class infomat.view.grouping.GroupingPanel
rowFrom - Variable in class infomat.view.InfomatView
rowFrom - Variable in class infomat.view.picture.SparsePartPicture
rowFrom - Variable in class infomat.view.picture.SparsePicture
rowFrom - Static variable in class infomat.view.picture.SparsePictureConstructor
rowGrid - Variable in class infomat.view.InfomatView
rowGroup - Variable in class infomat.view.picture.SparsePartPicture
rowGrouping - Static variable in class infomat.view.picture.SparsePictureConstructor
rowGroupingManager - Variable in class infomat.view.InfomatView
rowIObjectSet(IObjectSet) - Method in class infomat.vectorspace.IMatrix
rowLabel - Variable in class infomat.view.info.PixelInfoPanel.CellPanel
rowLabel - Variable in class infomat.view.menu.ToolbarView.InfoPanel
rowObject - Variable in class infomat.vectorspace.IMatrixCell
rowPanel - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
rowPanel - Variable in class infomat.view.grouping.GroupingPanel
rowPanel - Variable in class infomat.view.grouping.GroupingSelectionPanel
rowPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
rowPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
rowPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Groups
rowPanel - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
rowPanel - Variable in class infomat.view.info.PixelInfoFrame
rowPanel - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
rowPanel - Variable in class infomat.view.sorter.SorterPanel.Groups
rowPanel - Variable in class infomat.view.sorter.SorterPanel
rows - Variable in class infomat.Experimentator
rows - Variable in class infomat.vectorspace.IMatrix
rows - Variable in class infomat.view.pixel.PixelPanel
rowSet - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
rowShowPanel - Variable in class infomat.view.grouping.GroupingPanel
rowSimilarity - Variable in class infomat.view.similarity.SimilarityManager
rowSimPanel - Variable in class infomat.view.similarity.SimilarityFrame
rowsOrColumns - Variable in class infomat.view.algorithms.AlgorithmFrame
rowsOrColumns - Variable in class infomat.view.algorithms.LabelFrame
rowsOrColumns - Variable in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
rowsOrColumns - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
rowsOrColumns - Variable in class infomat.view.tools.ExportTextFrame
rowsOrColumns - Variable in class infomat.view.tools.MatrixSummaryFrame
rowsOrColumns - Variable in class infomat.view.tools.StoplistFrame
rowString - Variable in class infomat.view.tools.MatrixSummaryFrame.PartInfo
rowTitleMap - Variable in class mro.util.experimentation.ResultTable
rowTitles - Variable in class infomat.mro.ExperimentResultGenerator
rowTitles - Variable in class mro.util.experimentation.ResultTableStructure
rowTo - Variable in class infomat.view.InfomatView
rowTo - Variable in class infomat.view.picture.SparsePartPicture
rowTo - Variable in class infomat.view.picture.SparsePicture
rowTo - Static variable in class infomat.view.picture.SparsePictureConstructor
rts - Variable in class mro.util.experimentation.ResultTable
run() - Method in class infomat.view.MainWindow
  Run!

## S

s - Variable in class infomat.io.IMatrixIO.IMatrixHandler
s - Variable in class infomat.vectorspace.IObject
sameOwnerIdentifier(Properties) - Method in class mro.util.properties.Properties
  Returns true if this and ps has the same owner-object as decided by their owner identifier, an `UniqueIdentifier`.
sameProperties(Properties) - Method in class mro.util.properties.Properties
  Returns true if all Property:s (including PropertyGroup:s) have the same name and are in the same order, false otherwise.
sameProperties(PropertyGroup) - Method in class mro.util.properties.PropertyGroup
  Returns true if all Property:s (including PropertyGroup:s) have the same name and are in the same order, false otherwise.
sameRelatedIdentifiers(Properties) - Method in class mro.util.properties.Properties
  Returns true if this and ps has the same related identifiers (`UniqueIdentifier`-objects).
save(IMatrix, File) - Method in class infomat.io.IMatrixIO
  Exports the IMatrix in XML format
save(PrintWriter) - Method in class infomat.io.IMatrixIO
save(IObjectGrouping, IMatrix, SparseISimilarity, File) - Method in class infomat.io.IObjectGroupingIO
  Exports the Grouping IMatrix in XML format.
save(IObjectGrouping, IMatrix, File) - Method in class infomat.io.IObjectGroupingIO
  Exports the Grouping IMatrix in XML format
save(PrintWriter, SparseISimilarity) - Method in class infomat.io.IObjectGroupingIO
save(IVector<T>, File) - Method in class infomat.io.IVectorIO
save(PrintWriter, IVector<T>) - Method in class infomat.io.IVectorIO
save(IVector<IObject>, File) - Method in class infomat.io.OldIVectorIO
save(PrintWriter, IVector<IObject>) - Method in class infomat.io.OldIVectorIO
save(IMatrix, IObjectGrouping, ISimilarity, File) - Method in class infomat.io.textresult.IObjectGroupingTextResult
  Exports IObjectGrouping in XML format
save(IMatrix, IObjectGrouping, HashMap<IObjectGroup, IVector<T>>, ISimilarity, File) - Method in class infomat.io.textresult.IObjectGroupingTextResult
  Exports IObjectGrouping in XML format
save - Variable in class infomat.view.grouping.settings.GroupingFilePanel
save - Variable in class infomat.view.tools.StoplistFrame
save() - Method in class infomat.view.vector.IVectorPanel
save(String) - Method in class mro.util.experimentation.MeasureAbbreviationTable
  Saves a Table-object to a file with the specified file name.
save(File) - Method in class mro.util.experimentation.MeasureAbbreviationTable
  Saves a Table-object to the specified file.
save(String) - Method in class mro.util.experimentation.PathTable
  Saves a Table-object to a file with the specified file name.
save(File) - Method in class mro.util.experimentation.PathTable
  Saves a Table-object to the specified file.
save(String) - Method in class mro.util.experimentation.RelativeTable
  Saves a Table-object to a file with the specified file name.
save(File) - Method in class mro.util.experimentation.RelativeTable
  Saves a Table-object to the specified file.
save(String) - Method in class mro.util.experimentation.ResultTableStructure
  Saves a ResultTableStructure-object to a file with the specified file name.
save(File) - Method in class mro.util.experimentation.ResultTableStructure
  Saves a ResultTableStructure-object to the specified file.
save(String) - Method in class mro.util.experimentation.Table
  Saves a Table-object to a file with the specified file name.
save(File) - Method in class mro.util.experimentation.Table
  Saves a Table-object to the specified file.
save - Variable in class mro.util.measures.dialog.MeasuresPanel.FilePanel
save(String) - Method in class mro.util.measures.Measures
  Saves a measures-object to a file with the specified file name.
save(File) - Method in class mro.util.measures.Measures
save - Variable in class mro.util.properties.dialog.PropertiesPanel.FilePanel
save(String) - Method in class mro.util.properties.Properties
  Saves a Properties-object to a file with the specified file name.
save(File) - Method in class mro.util.properties.Properties
  Saves a Properties-object to the specified file.
saveable - Variable in class infomat.view.vector.IVectorPanel
saveB - Variable in class infomat.view.vector.IVectorPanel
saveCells(IMatrix, PrintWriter) - Method in class infomat.io.IMatrixIO
saveCompressed(IMatrix, String) - Method in class infomat.io.IMatrixIO
  Exports the IMatrix in XML format The file is saved in compressed .zip-format.
saveCompressed(IObjectGrouping, IMatrix, String) - Method in class infomat.io.IObjectGroupingIO
  Exports the IMatrix in XML format The file is saved in compressed .zip-format.
saveCompressed(IVector<T>, String) - Method in class infomat.io.IVectorIO
saveCompressed(IVector<IObject>, String) - Method in class infomat.io.OldIVectorIO
saveGroupFile(PrintWriter, String, IObjectGroup, String, IVector<T>, ISimilarity, String) - Method in class infomat.io.textresult.IObjectGroupTextResult
saveGroupFiles(HashMap<IObjectGroup, IVector<T>>) - Method in class infomat.io.textresult.IObjectGroupingTextResult
saveGroupingFile(HashMap<IObjectGroup, IVector<T>>) - Method in class infomat.io.textresult.IObjectGroupingTextResult
saveGroupNode(PrintWriter, IObjectGroupNode, HashMap<IObjectGroup, IVector<T>>) - Method in class infomat.io.textresult.IObjectGroupingTextResult
saveHierarchy(PrintWriter, HierarchicalIObjectGrouping, HashMap<IObjectGroup, IVector<T>>) - Method in class infomat.io.textresult.IObjectGroupingTextResult
saveIMatrix(File) - Method in class infomat.vectorspace.IMatrix
saveIMatrixFile(File) - Method in class infomat.view.InfomatModel
saveIMatrixPicture(File) - Method in class infomat.view.InfomatModel
saveIMatrixPicture(File) - Method in class infomat.view.InfomatView
saveIMatrixPicture(File) - Method in class infomat.view.picture.SparsePicture
saveInfoHTMLFiles(String) - Method in class infomat.io.textresult.IObjectGroupingTextResult
saveIObjectGroupingFile(IObjectGrouping, File) - Method in class infomat.vectorspace.IMatrix
saveIObjectGroupingFile(IObjectGrouping, File) - Method in class infomat.view.InfomatModel
saveIObjectSet(IObjectSet, PrintWriter) - Method in class infomat.io.IMatrixIO
saveIVector(PrintWriter, IVector<T>, int, String) - Static method in class infomat.io.textresult.IVectorTextResult
SAVEMATRIXFILE - Static variable in class infomat.view.menu.Menu
SAVEMATRIXPICTURE - Static variable in class infomat.view.menu.Menu
savePart(PrintWriter, IVector<T>) - Method in class infomat.io.IVectorIO
savePart(PrintWriter, IVector<IObject>) - Method in class infomat.io.OldIVectorIO
savePartGroupFile(PrintWriter, IObjectGroup, String, IVector<T>, ISimilarity, String) - Method in class infomat.io.textresult.IObjectGroupTextResult
savePropertiesToDirectory(String) - Method in class mro.util.properties.PropertiesPool
  Saves all Properties as files in a directory.
savePropertiesToDirectory(File) - Method in class mro.util.properties.PropertiesPool
  Saves all Properties as files in a directory.
saveToDirectory(String) - Method in class mro.util.properties.Properties
  Saves a Properties-object to the directory with specified file name.
sClass - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
scrollPanel - Variable in class infomat.view.info.PixelInfoPanel.CellsPanel
sdm - Variable in class infomat.bridges.jsdm.JSDMWrapper
secondIndexOrderVector - Variable in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
secondIndexSet - Variable in class mro.util.doublehashmap.DoubleHashMap
secondIndexSet - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
secondMap - Variable in class mro.util.doublehashmap.DoubleHashMap
secondMap - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
selAllB - Variable in class infomat.view.vector.IVectorPanel
select(Vector) - Method in class infomat.view.pixel.PixelFrame
SELECT_WHAT_CELLS - Static variable in class infomat.view.pixel.PixelFrame
SELECT_WHAT_COLUMNS - Static variable in class infomat.view.pixel.PixelFrame
SELECT_WHAT_ROWS - Static variable in class infomat.view.pixel.PixelFrame
selectable - Variable in class infomat.view.vector.IVectorIndexPanel
selectable - Variable in class infomat.view.vector.IVectorPanel
selectAllB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectB - Variable in class infomat.view.pixel.PixelFrame.SelectionPanel
selectCellB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectChoices - Variable in class infomat.view.pixel.PixelFrame.SelectionPanel
selectColB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectColForRowB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectCurrent(SparsePixel) - Method in class infomat.view.pixel.PixelFrame
selectCurrent(IObjectGroup, boolean) - Method in class infomat.view.pixel.PixelFrame
selected - Variable in class infomat.view.algorithms.AlgorithmSelectionPanel
selected - Variable in class infomat.view.algorithms.MatrixWeightingSelectionPanel
selected - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
selected - Variable in class infomat.view.grouping.GroupingSelectionPanel
selected - Variable in class infomat.view.similarity.SimilarityPanel
selected - Variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
selectedB - Variable in class infomat.view.pixel.PixelFrame.ControlPanel
selectedPixelPanel - Variable in class infomat.view.pixel.PixelFrame
selectElForRowAndColB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
SELECTION_STATE_AREA - Static variable in class infomat.view.pixel.PixelFrame
SELECTION_STATE_SINGLE - Static variable in class infomat.view.pixel.PixelFrame
selectionPanel - Variable in class infomat.view.pixel.PixelFrame
selectionState - Variable in class infomat.view.pixel.PixelFrame
selectRowAndColForElB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectRowB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectRowForColB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
selectWhat - Variable in class infomat.view.pixel.PixelFrame
selectWhatButton - Variable in class infomat.view.pixel.PixelFrame.ControlPanel
selfSimilarity(IObjectGroup) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
selfSimilarityMeasure(IObjectGroup) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
sep - Variable in class mro.util.CommonPath
separator - Variable in class infomat.io.textresult.IObjectGroupingTextResult
separator - Variable in class infomat.io.textresult.IObjectGroupTextResult
separator - Variable in class infomat.mro.FileConverter
separatorAtPos(String, int) - Static method in class mro.util.PathHelper
separators - Static variable in class mro.util.PathHelper
SessionPanel - Class in infomat.view
  The Panel with all controls for a specific session.
SessionPanel(InfomatModel) - Constructor for class infomat.view.SessionPanel
  Create the SessionPanel
set - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
set(SparsePixel) - Method in class infomat.view.pixel.PixelPanel
set(Vector) - Method in class infomat.view.pixel.PixelPanel
set(IObjectGroup, boolean) - Method in class infomat.view.pixel.PixelPanel
setAlgorithm(GroupingAlgorithm) - Method in class infomat.view.algorithms.AlgorithmFrame
setAllFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
setAllMeasuresStampsRecursively(String) - Method in class mro.util.measures.MeasureGroup
  Sets all Measure "stamps" recursively.
setAllMeasuresStampsRecursively(Measure, String) - Method in class mro.util.measures.MeasureGroup
setAllSelectedFromGathered() - Method in class infomat.view.pixel.PixelFrame
setAllSelectedToGathered() - Method in class infomat.view.pixel.PixelFrame
setAmbiguous(boolean) - Method in class infomat.vectorspace.IObject
setBottomIObjectGroupNodes(Vector<IObjectGroupNode>) - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
setCaption(String) - Method in class mro.util.experimentation.ResultTableStructure
setCellsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
setCellsSelectedFromGathered() - Method in class infomat.view.pixel.PixelFrame
setChanged() - Method in class infomat.view.InfomatModel
setColoring(GroupingColoring) - Method in class infomat.view.grouping.settings.GroupingSettings
setCols(int, int) - Method in class infomat.view.picture.Guide
setColumnColorMap(HashMap<Integer, SparsePixel>) - Method in class infomat.view.picture.SparsePartPicture
setColumnGroupingManager(GroupingSettingsManager) - Method in class infomat.view.InfomatView
setColumnIObject(IObject) - Method in class infomat.vectorspace.IMatrixCell
setColumnIObjectSet(IObjectSet) - Method in class infomat.vectorspace.IMatrix
  Sets the "column" IObjectSet.
setColumns(IVector<IObject>) - Method in class infomat.view.pixel.PixelPanel
setColumnsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
setColumnsFromRows(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
setColumnsSelectedFromGathered() - Method in class infomat.view.pixel.PixelFrame
setColumnTitles(Table<String>) - Method in class mro.util.experimentation.ResultTableStructure
setCommonPath(String) - Method in class mro.util.experimentation.PathTable
setCommonPath(String) - Method in class mro.util.experimentation.ResultTableStructure
setCurrentColoringByGrouping(IObjectGrouping) - Method in class infomat.view.grouping.settings.GroupingSettingsManager
setCurrentInfo(IObject) - Method in class infomat.view.info.DimensionInfoPanel
setCurrentInfo(IObject, IObject) - Method in class infomat.view.info.PixelInfoFrame
setCurrentInfo(SparsePixel) - Method in class infomat.view.info.PixelInfoPanel.CellsPanel
setCurrentInfo(IObject, IObject) - Method in class infomat.view.info.PixelInfoPanel
setCurrentInfo(SparsePixel) - Method in class infomat.view.pixel.PixelFrame
setCurrentInfo(IObjectGroup, boolean) - Method in class infomat.view.pixel.PixelFrame
setDescription(String) - Method in class mro.util.measures.Measure
setDimension(String) - Method in class mro.util.experimentation.RelativeEntry
setDragStart(IObject, IObject) - Method in class infomat.view.InfomatView
setDragStart(IObject, IObject) - Method in class infomat.view.picture.SparsePicture
setDraw(boolean) - Method in class infomat.view.picture.Guide
setElements(Vector) - Method in class infomat.view.pixel.PixelPanel
setFileable(boolean) - Method in class infomat.view.vector.IVectorPanel
setFileable(boolean) - Method in class mro.util.measures.dialog.MeasuresPanel
setFileChooser() - Method in class infomat.view.tools.StoplistFrame
setFileChooser() - Method in class infomat.view.vector.IVectorPanel
setFilePath(String) - Method in class infomat.view.vector.IVectorPanel
setGlobalWeight(IObject, float) - Method in class infomat.vectorspace.IMatrix
setGridChanged(boolean) - Method in class infomat.view.InfomatView
setGridXY(int, int) - Method in class infomat.view.picture.SparsePartPicture
  Use with care!
setGrouping(IObjectGrouping) - Method in class infomat.vectorspace.IObjectSet
  Sets the current IObjectGrouping.
setGroupingToBottomGrouping() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
setGroupingToRootGrouping() - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
setGroupMeasureMap(HashMap<IObjectGroup, Measure>) - Method in class infomat.view.sorter.SorterPanel.Groups
setGroups(Vector<IObjectGroup>) - Method in class infomat.vectorspace.IObjectGrouping
  Removes all groups and adds the vector.
setHoldPixel(IObject, IObject) - Method in class infomat.view.info.PixelInfoFrame
setIMatrix(IMatrix) - Method in interface infomat.algorithms.grouping.NeedsIMatrix
  Sets the IMatrix.
setIMatrix(IMatrix) - Method in class infomat.algorithms.grouping.RelativeClusterer
setIMatrix(IMatrix) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
setIMatrix(IMatrix) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
setIMatrixDimension(boolean) - Method in interface infomat.algorithms.grouping.NeedsIMatrixDimension
  Sets a boolean that indicates wether the algorithm should consider rows or columns of a matrix.
setIMatrixDimension(boolean) - Method in class infomat.algorithms.grouping.RelativeClusterer
setIMatrixDimension(boolean) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
setIMatrixDimension(boolean) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
setInfo(String, String) - Method in class infomat.view.menu.ToolbarView
  Set which word and document is pointed at
setInfoPixelFrame(int, int) - Method in class infomat.view.picture.SparsePicture
setIVector(IVector<IObject>) - Method in class infomat.vectorspace.IObjectGroup
  Sets this group to contain the IObject:s in the specified IVector.
setIVector(IVector<T>) - Method in class infomat.view.vector.IVectorPanel
setIVector(IVector<T>, IVector<T>) - Method in class infomat.view.vector.IVectorPanel
setIVector(IVector<IVectorIndex>) - Method in class infomat.view.vector.Test
setLargeImageCol(boolean) - Method in class infomat.view.picture.SparsePartPicture
setLargeImageRow(boolean) - Method in class infomat.view.picture.SparsePartPicture
setLoadSave(boolean, boolean) - Method in class infomat.view.vector.IVectorPanel
setLocalWeight(float) - Method in class infomat.vectorspace.IMatrixCell
  Use with caution!
setMaxOpacity(float) - Method in class infomat.view.grouping.settings.GroupingSettings
setMaxOpacity(float) - Method in class infomat.view.InfomatView
setMeasure(Measure) - Method in class mro.util.measures.dialog.MeasuresPanel.InfoPanel
setMeasureAbbreviation(String) - Method in class mro.util.experimentation.PathEntry
setMeasureAbbreviationTable(MeasureAbbreviationTable) - Method in class mro.util.experimentation.ResultTableStructure
setMeasureName(String) - Method in class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
setMinOpacity(float) - Method in class infomat.view.grouping.settings.GroupingSettings
setMinOpacity(float) - Method in class infomat.view.InfomatView
setMouseState(int) - Method in class infomat.view.InfomatView
setName(String) - Method in class infomat.vectorspace.IObjectGroup
setName(String) - Method in class mro.util.measures.MeasureGroup
setNewColorForGroup(Color, IObjectGroup) - Method in class infomat.view.grouping.settings.GroupingColoring
setNewGroupsInComboBox(IObjectSet) - Method in class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
setNumber(String) - Method in class mro.util.experimentation.RelativeEntry
setNumberOfIMatrixColumns(double) - Static method in class infomat.view.picture.SparsePixel
  Not a genuine copy-constructor! Copies references...
setNumberOfIMatrixRows(double) - Static method in class infomat.view.picture.SparsePixel
setOffsetXY(int, int) - Method in class infomat.view.picture.SparsePartPicture
  Use with care!
setOpacity() - Method in class infomat.view.grouping.settings.GroupingSettings
setOpacity(float) - Method in class infomat.view.InfomatView
  Set the opacity for the image.
setOpacityChanged() - Method in class infomat.view.InfomatOverview
setOrderable(boolean) - Method in class infomat.view.vector.IVectorPanel
setOrigo(int, int) - Method in class infomat.view.picture.SparsePartPicture
  Use with care!
setOverviewPicture(boolean) - Method in class infomat.view.picture.SparsePicture
setOwnerIdentifier(UniqueIdentifier) - Method in class mro.util.properties.Properties
  Set the owner identifier to the specified `UniqueIdentifier`.
setPaths(Vector<String>) - Method in class mro.util.experimentation.PathEntry
setPaths(PathTable) - Method in class mro.util.experimentation.ResultTableStructure
setPlace(String) - Method in class mro.util.experimentation.RelativeEntry
setProperties(Properties) - Method in class infomat.algorithms.grouping.BisectingKMeans
setProperties(Properties) - Method in class infomat.algorithms.grouping.GroupMerger
setProperties(Properties) - Method in class infomat.algorithms.grouping.IVectorCategorizer
setProperties(Properties) - Method in class infomat.algorithms.grouping.KMeans
setProperties(Properties) - Method in class infomat.algorithms.grouping.LocationGrouper
setProperties(Properties) - Method in class infomat.algorithms.grouping.RandomClusterer
setProperties(Properties) - Method in class infomat.algorithms.grouping.RelativeClusterer
setProperties(Properties) - Method in class infomat.algorithms.grouping.TopDownSplitter
setProperties(Properties) - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
setProperties(Properties) - Method in class infomat.algorithms.labeling.CentroidLabeler
setProperties(Properties) - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
setProperties(Properties) - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
setProperties(Properties) - Method in class infomat.algorithms.labeling.LabelReducer
setProperties(Properties) - Method in class infomat.algorithms.labeling.RelativeLabeler
setProperties(Properties) - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
setProperties(Properties) - Method in class infomat.algorithms.reduction.SizeReducer
setProperties(Properties) - Method in class infomat.bridges.jsdm.JSDMSimilarity
setProperties(Properties) - Method in class infomat.bridges.jsdm.JSDMWrapper
setProperties(Properties) - Method in class infomat.bridges.jsdm.RIIO
setProperties(Properties) - Method in class infomat.Clusterer
setProperties(Properties) - Method in class infomat.evaluation.Evaluation
setProperties(Properties) - Method in class infomat.evaluation.ExtrinsicEvaluation
setProperties(Properties) - Method in class infomat.evaluation.IntrinsicEvaluation
setProperties(Properties) - Method in class infomat.evaluation.MatrixMeasures
setProperties(Properties) - Method in class infomat.Experimentator
setProperties(Properties) - Method in class infomat.io.IObjectGroupingIO
setProperties(Properties) - Method in class infomat.io.textresult.IObjectGroupingTextResult
setProperties(Properties) - Method in class infomat.io.textresult.IObjectGroupTextResult
setProperties(Properties) - Method in class infomat.mro.Experimentator
setProperties(Properties) - Method in class infomat.mro.ExperimentatorNumberOfWords
setProperties(Properties) - Method in class infomat.mro.ExperimentatorReductionReduction
setProperties(Properties) - Method in class infomat.mro.ExperimentResultGenerator
setProperties(Properties) - Method in class infomat.mro.FileConverter
setProperties(Properties) - Method in class infomat.vectorspace.IMatrixCellFilter
setProperties(Properties) - Method in class infomat.vectorspace.Normalizer
setProperties(Properties) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
setProperties(Properties) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
setProperties(Properties) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
setProperties(Properties) - Method in class infomat.vectorspace.Stoplist
setProperties(Properties) - Method in class infomat.vectorspace.weighting.CountWeighter
setProperties(Properties) - Method in class infomat.vectorspace.weighting.TFIDFWeighter
setProperties(Properties) - Method in class infomat.vectorspace.weighting.TFWeighter
setProperties(Properties) - Method in class infomat.view.InfomatModel
setProperties(Properties) - Method in class mro.util.experimentation.ExperimentResultGenerator
setProperties(Properties) - Method in class mro.util.properties.dialog.DummyClass
setProperties(Properties) - Method in interface mro.util.properties.HasProperties
setPropertiesInPropertyVector(Vector<Property>) - Method in class mro.util.properties.Properties
  Uses #setProperty().
setProperty(String, Object) - Method in class infomat.algorithms.grouping.BisectingKMeans
setProperty(String, Object) - Method in class infomat.algorithms.grouping.GroupMerger
setProperty(String, Object) - Method in class infomat.algorithms.grouping.IVectorCategorizer
setProperty(String, Object) - Method in class infomat.algorithms.grouping.KMeans
setProperty(String, Object) - Method in class infomat.algorithms.grouping.LocationGrouper
setProperty(String, Object) - Method in class infomat.algorithms.grouping.RandomClusterer
setProperty(String, Object) - Method in class infomat.algorithms.grouping.RelativeClusterer
setProperty(String, Object) - Method in class infomat.algorithms.grouping.TopDownSplitter
setProperty(String, Object) - Method in class infomat.algorithms.labeling.CentroidBoostLabeler
setProperty(String, Object) - Method in class infomat.algorithms.labeling.CentroidLabeler
setProperty(String, Object) - Method in class infomat.algorithms.labeling.CentroidRankingBoostLabeler
setProperty(String, Object) - Method in class infomat.algorithms.labeling.CombinedCentroidLabeler
setProperty(String, Object) - Method in class infomat.algorithms.labeling.LabelReducer
setProperty(String, Object) - Method in class infomat.algorithms.labeling.RelativeLabeler
setProperty(String, Object) - Method in class infomat.algorithms.labeling.WeightRankingBoostLabeler
setProperty(String, Object) - Method in class infomat.algorithms.reduction.SizeReducer
setProperty(String, Object) - Method in class infomat.bridges.jsdm.JSDMSimilarity
setProperty(String, Object) - Method in class infomat.bridges.jsdm.JSDMWrapper
setProperty(String, Object) - Method in class infomat.bridges.jsdm.RIIO
setProperty(String, Object) - Method in class infomat.Clusterer
setProperty(String, Object) - Method in class infomat.evaluation.Evaluation
setProperty(String, Object) - Method in class infomat.evaluation.ExtrinsicEvaluation
setProperty(String, Object) - Method in class infomat.evaluation.IntrinsicEvaluation
setProperty(String, Object) - Method in class infomat.evaluation.MatrixMeasures
setProperty(String, Object) - Method in class infomat.Experimentator
setProperty(String, Object) - Method in class infomat.io.IObjectGroupingIO
setProperty(String, Object) - Method in class infomat.io.textresult.IObjectGroupingTextResult
setProperty(String, Object) - Method in class infomat.io.textresult.IObjectGroupTextResult
setProperty(String, Object) - Method in class infomat.mro.Experimentator
setProperty(String, Object) - Method in class infomat.mro.ExperimentatorNumberOfWords
setProperty(String, Object) - Method in class infomat.mro.ExperimentatorReductionReduction
setProperty(String, Object) - Method in class infomat.mro.ExperimentResultGenerator
setProperty(String, Object) - Method in class infomat.mro.FileConverter
setProperty(String, Object) - Method in class infomat.vectorspace.IMatrixCellFilter
setProperty(String, Object) - Method in class infomat.vectorspace.Normalizer
setProperty(String, Object) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
setProperty(String, Object) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
setProperty(String, Object) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
setProperty(String, Object) - Method in class infomat.vectorspace.Stoplist
setProperty(String, Object) - Method in class infomat.vectorspace.weighting.CountWeighter
setProperty(String, Object) - Method in class infomat.vectorspace.weighting.TFIDFWeighter
setProperty(String, Object) - Method in class infomat.vectorspace.weighting.TFWeighter
setProperty(String, Object) - Method in class infomat.view.InfomatModel
setProperty(String, Object) - Method in class mro.util.experimentation.ExperimentResultGenerator
setProperty(String, Object) - Method in class mro.util.properties.dialog.DummyClass
setProperty(Property) - Method in class mro.util.properties.dialog.PropertiesPanel.InfoPanel
setProperty(String, Object) - Method in interface mro.util.properties.HasProperties
setProperty(String, Object) - Method in class mro.util.properties.Properties
  Sets a Property with the given name to the given value.
setPropertyGroupName(String) - Method in class mro.util.properties.PropertyGroup
setRect(int, int) - Method in class infomat.view.picture.Guide
setRelativeNumber(String) - Method in class mro.util.experimentation.RelativeEntry
setRelativeTable(RelativeTable) - Method in class mro.util.experimentation.ResultTableStructure
setRestrictionGroup(IObjectGroup) - Method in class infomat.view.vector.IVectorPanel
setRootIObjectGroupNodes(Vector<IObjectGroupNode>) - Method in class infomat.vectorspace.HierarchicalIObjectGrouping
setRoundString(String) - Method in class mro.util.experimentation.PathEntry
setRowGroupingManager(GroupingSettingsManager) - Method in class infomat.view.InfomatView
setRowIObject(IObject) - Method in class infomat.vectorspace.IMatrixCell
setRowIObjectSet(IObjectSet) - Method in class infomat.vectorspace.IMatrix
  Sets the "row" IObjectSet.
setRows(int, int) - Method in class infomat.view.picture.Guide
setRows(IVector<IObject>) - Method in class infomat.view.pixel.PixelPanel
setRowsFrom(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
setRowsFromColumns(PixelPanel) - Method in class infomat.view.pixel.PixelPanel
setRowsSelectedFromGathered() - Method in class infomat.view.pixel.PixelFrame
setRowTitles(Table<String>) - Method in class mro.util.experimentation.ResultTableStructure
setSelectable(boolean) - Method in class infomat.view.vector.IVectorPanel
setSelectAreaPixelFrame(IObject, IObject) - Method in class infomat.view.picture.SparsePicture
setSelected(boolean) - Method in class infomat.view.vector.IVectorIndexPanel
setSelectedCellsToGathered() - Method in class infomat.view.pixel.PixelFrame
setSelectedColumnsForGatheredRows() - Method in class infomat.view.pixel.PixelFrame
setSelectedColumnsToGathered() - Method in class infomat.view.pixel.PixelFrame
setSelectedElementsForGatheredRowsAndColumns() - Method in class infomat.view.pixel.PixelFrame
setSelectedRowsAndColumnsForGatheredElements() - Method in class infomat.view.pixel.PixelFrame
setSelectedRowsForGatheredColumns() - Method in class infomat.view.pixel.PixelFrame
setSelectedRowsToGathered() - Method in class infomat.view.pixel.PixelFrame
setSelectionState(int) - Method in class infomat.view.pixel.PixelFrame
setSelectPixelFrame(int, int) - Method in class infomat.view.picture.SparsePicture
setSelectWhat(int) - Method in class infomat.view.pixel.PixelFrame
setShowValue(boolean) - Method in class infomat.view.vector.IVectorIndexPanel
setShowValues(boolean) - Method in class infomat.view.vector.IVectorPanel
setSimilarity(ISimilarity) - Method in class infomat.algorithms.grouping.BisectingKMeans
setSimilarity(SparseISimilarity) - Method in class infomat.algorithms.grouping.IVectorCategorizer
setSimilarity(ISimilarity) - Method in class infomat.algorithms.grouping.KMeans
setSimilarity(ISimilarity) - Method in interface infomat.algorithms.grouping.NeedsISimilarity
setSimilarity(SparseISimilarity) - Method in interface infomat.algorithms.grouping.NeedsSparseISimilarity
setSimilarity(SparseISimilarity) - Method in class infomat.algorithms.grouping.RelativeClusterer
  The similarity should be the one for the other dimension!
setSimilarity(ISimilarity) - Method in class infomat.algorithms.grouping.TopDownSplitter
setSimilarity(SparseISimilarity, boolean) - Method in class infomat.view.similarity.SimilarityManager
setSimilarity(ISimilarity) - Method in class infomat.view.vector.IVectorPanel
  Only works when the IVectorIndex:es are IObjects.
setSimilaritySort(boolean) - Method in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
setSparsePicture(SparsePicture) - Method in class infomat.view.picture.SparsePartPicture
setStamp(String) - Method in class mro.util.measures.Measure
setStopIObjectsVector(IVector<IObject>) - Method in class infomat.vectorspace.Stoplist
  Very unsafe!
setString(String) - Method in class infomat.vectorspace.IObject
setText(String) - Method in class infomat.view.info.DimensionInfoPanel.InfoLabel
setText(String, String) - Method in class infomat.view.menu.ToolbarView.InfoPanel
setTextFileable(boolean) - Method in class infomat.view.vector.IVectorPanel
setTextFilePath(String) - Method in class infomat.view.vector.IVectorPanel
setTextLoadSave(boolean, boolean) - Method in class infomat.view.vector.IVectorPanel
settingsFile - Variable in class infomat.view.InfomatModel
settingsFrame - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
settingsFrame - Variable in class infomat.view.grouping.GroupingSelectionPanel
setToolbarView(ToolbarView) - Method in class infomat.view.InfomatView
  Save toolbarView for later use.
setToolbarView(ToolbarView) - Method in class infomat.view.menu.ToolbarController
setToolbarView(ToolbarView) - Method in class infomat.view.picture.SparsePartPicture
setToolbarView(ToolbarView) - Method in class infomat.view.picture.SparsePicture
setTXTStopFiles(Stoplist) - Method in class infomat.view.vector.IVectorPanel
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.BisectingKMeans
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.IVectorCategorizer
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.KMeans
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.LocationGrouper
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.RandomClusterer
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.RelativeClusterer
setUniqueIdentifier(UniqueIdentifier) - Method in class infomat.algorithms.grouping.TopDownSplitter
setUniqueIdentifier(UniqueIdentifier) - Method in interface mro.util.UniqueIdentifiable
setValue(double) - Method in class mro.util.measures.Measure
setValue(Object) - Method in class mro.util.properties.Property
setView(InfomatView) - Method in class infomat.view.InfomatModel
  Set the view.
setView(InfomatView) - Method in class infomat.view.picture.SparsePicture
setVisible(boolean) - Method in class infomat.view.info.PixelInfoFrame
setVisible(boolean) - Method in class infomat.view.InfomatOverview
setWeight(float) - Method in class infomat.vectorspace.IMatrixCell
  Use with caution!
setWeighter(Weighter) - Method in class infomat.view.algorithms.MatrixWeightingFrame
setXMLFiles() - Method in class infomat.view.vector.IVectorPanel
setYLast(int) - Method in class infomat.view.picture.SparsePixel
  Used to adjust the height of column coloring SparsePixels.
showGroupingPanel - Variable in class infomat.view.SessionPanel
showMessage(String, String) - Method in class infomat.view.tools.StoplistFrame
showMessage(String, String) - Method in class infomat.view.vector.IVectorPanel
showMessage(String, String) - Method in class mro.util.measures.dialog.MeasuresPanel
showMessage(String, String) - Method in class mro.util.properties.dialog.PropertiesPanel
showProperties() - Method in class infomat.view.InfomatModel
showValue - Variable in class infomat.view.vector.IVectorIndexPanel
showValues - Variable in class infomat.view.vector.IVectorPanel
sim(IObject, IObject) - Method in class infomat.bridges.jsdm.JSDMSimilarity
sim(IObject, IObjectGroup) - Method in class infomat.bridges.jsdm.JSDMSimilarity
sim(IObjectGroup, IObjectGroup) - Method in class infomat.bridges.jsdm.JSDMSimilarity
sim(float[], float[]) - Method in class infomat.bridges.jsdm.JSDMSimilarity
sim(float[], float[]) - Method in class infomat.vectorspace.similarity.DenseISimilarity
sim(IObject, IObject) - Method in class infomat.vectorspace.similarity.ISimilarity
sim(IObject, IObjectGroup) - Method in class infomat.vectorspace.similarity.ISimilarity
sim(IObjectGroup, IObjectGroup) - Method in class infomat.vectorspace.similarity.ISimilarity
sim(IObject, IObject) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
  Calculates the similarity between two IObject:s.
sim(IObject, IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
  Calculates the similarity between IObject and a IObjectGroup.
sim(IObjectGroup, IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
  Calculates the similarity between two IObjectGroup:s.
sim(IVector<U>, IVector<V>) - Method in class infomat.vectorspace.similarity.SparseDotSimilarity
  Calculates the similarity between two representations.
sim(IVector<U>, IVector<V>) - Method in class infomat.vectorspace.similarity.SparseISimilarity
sim(IObject, IObject) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
  Calculates the similarity between two IObject:s.
sim(IObject, IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
  Calculates the similarity between IObject and a IObjectGroup.
sim(IObjectGroup, IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
  Calculates the similarity between two IObjectGroup:s.
sim(IVector<U>, IVector<V>) - Method in class infomat.vectorspace.similarity.SparseLiteralSimilarity
  Calculates the similarity between two representations.
sim(IObject, IObject) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
  Calculates the similarity between two IObject:s.
sim(IObject, IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
  Calculates the similarity between IObject and a IObjectGroup.
sim(IObjectGroup, IObjectGroup) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
  Calculates the similarity between two IObjectGroup:s.
sim(IVector<U>, IVector<V>) - Method in class infomat.vectorspace.similarity.SparseOverlapSimilarity
  Calculates the similarity between two representations.
similarity - Variable in class infomat.algorithms.grouping.BisectingKMeans
similarity - Variable in class infomat.algorithms.grouping.IVectorCategorizer
similarity - Variable in class infomat.algorithms.grouping.KMeans
similarity - Variable in class infomat.algorithms.grouping.RelativeClusterer
similarity - Variable in class infomat.algorithms.grouping.TopDownSplitter
similarity - Variable in class infomat.evaluation.Evaluation
similarity - Variable in class infomat.evaluation.IntrinsicEvaluation
similarity - Variable in class infomat.evaluation.IntrinsicGroupEvaluation
similarity - Variable in class infomat.io.textresult.IObjectGroupingTextResult
similarity - Variable in class infomat.mro.Experimentator
similarity - Variable in class infomat.mro.ExperimentatorNumberOfWords
similarity - Variable in class infomat.mro.ExperimentatorReductionReduction
similarity - Variable in class infomat.view.vector.IVectorPanel
similarityFrame - Variable in class infomat.view.InfomatModel
SimilarityFrame - Class in infomat.view.similarity
SimilarityFrame(InfomatModel) - Constructor for class infomat.view.similarity.SimilarityFrame
SIMILARITYFRAME_PREFERRED_SIZE - Static variable in class infomat.view.similarity.SimilarityFrame
similarityManager - Variable in class infomat.view.similarity.SimilarityFrame
SimilarityManager - Class in infomat.view.similarity
SimilarityManager(InfomatModel) - Constructor for class infomat.view.similarity.SimilarityManager
similarityManager - Variable in class infomat.view.similarity.SimilarityPanel
SIMILARITYONOFF - Static variable in class infomat.view.menu.Menu
SimilarityPanel - Class in infomat.view.similarity
SimilarityPanel(SimilarityManager, InfomatModel, boolean) - Constructor for class infomat.view.similarity.SimilarityPanel
similaritySortable - Variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
simNames - Variable in class infomat.view.similarity.SimilarityPanel
simOB - Variable in class infomat.view.vector.IVectorPanel
simpleAddingOfMeasureForAveraging(Measure, MeasureGroup) - Method in class mro.util.measures.Averagor
size() - Method in class infomat.vectorspace.vector.IVector
  Returns the number of indexes used in this IVector.
size - Variable in class mro.util.doublehashmap.DoubleHashMap
size() - Method in class mro.util.doublehashmap.DoubleHashMap
size - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
size() - Method in class mro.util.doublehashmap.GenericDoubleHashMap
size() - Method in class mro.util.measures.MeasureGroup
size() - Method in class mro.util.properties.Properties
size() - Method in class mro.util.properties.PropertiesPool
  Returns the number of Properties in this PropertiesPool.
sizeOfFirstIndex() - Method in class mro.util.doublehashmap.DoubleHashMap
sizeOfFirstIndex() - Method in class mro.util.doublehashmap.GenericDoubleHashMap
sizeOfSecondIndex() - Method in class mro.util.doublehashmap.DoubleHashMap
sizeOfSecondIndex() - Method in class mro.util.doublehashmap.GenericDoubleHashMap
sizeOfSecondIndexForElementInFirst(Object) - Method in class mro.util.doublehashmap.DoubleHashMap
sizeOfSecondIndexForElementInFirst(F) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
SizeReducer - Class in infomat.algorithms.labeling
  Reduces IObjectGroups and IObjectGroupings compared to an other.
SizeReducer() - Constructor for class infomat.algorithms.labeling.SizeReducer
SizeReducer - Class in infomat.algorithms.reduction
  Reduces IObjectGroups and IObjectGroupings compared to an other.
SizeReducer() - Constructor for class infomat.algorithms.reduction.SizeReducer
SizeReducer(Properties) - Constructor for class infomat.algorithms.reduction.SizeReducer
SmallButton - Class in infomat.view.util
SmallButton(String) - Constructor for class infomat.view.util.SmallButton
smp - Variable in class infomat.view.sorter.SorterPanel.GroupsHeader
softGroupingMaxIdSoFar - Static variable in class infomat.vectorspace.SoftIObjectGrouping
SoftIObjectGrouping - Class in infomat.vectorspace
  A SoftIObjectGrouping
SoftIObjectGrouping(String) - Constructor for class infomat.vectorspace.SoftIObjectGrouping
solidCompound - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
sort() - Method in class infomat.vectorspace.IObjectGrouping
  Sorts all IObjectGroup:s in their internal order and sorts the IObject:s in that order in the "ordered" vector.
sort(HashMap<IObject, Float>) - Method in class infomat.vectorspace.ordering.IObjectFloatSorter
sort(Vector<Measure>) - Method in class mro.util.measures.dialog.MeasuresPanel.MeasureMeasureGroupSorter
sort(Vector<Property>) - Method in class mro.util.properties.dialog.PropertiesPanel.PropertyPropertyGroupSorter
SORT_INVERT - Static variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
SORT_LITERAL - Static variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
SORT_ORIGINAL - Static variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
SORT_RANDOM - Static variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
SORT_SIMILARITY - Static variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
SORT_SIMILARITY_TO_SELECTED - Static variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
sortAllMeasureVectorsInStampOrder() - Method in class mro.util.measures.AverageMeasureGroup
sortColColB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
sortColRowB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
Sorter - Class in infomat.vectorspace
  A class for sorting of IObject:s.
Sorter() - Constructor for class infomat.vectorspace.Sorter
sorter() - Method in class infomat.view.InfomatModel
SORTER - Static variable in class infomat.view.menu.Menu
sorterFrame - Variable in class infomat.view.InfomatModel
SorterFrame - Class in infomat.view.sorter
SorterFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.sorter.SorterFrame
sorterMethodPanel - Variable in class infomat.view.sorter.SorterPanel
SorterPanel - Class in infomat.view.sorter
  Displayer of sorter panel info.
SorterPanel(InfomatModel, InfomatView, IObjectSet, boolean) - Constructor for class infomat.view.sorter.SorterPanel
sorterPanel - Variable in class infomat.view.sorter.SorterPanel.Ordering
SorterPanel.ChangeGroupingPanel - Class in infomat.view.sorter
SorterPanel.ChangeGroupingPanel(SorterPanel, IObjectSet, String) - Constructor for class infomat.view.sorter.SorterPanel.ChangeGroupingPanel
SorterPanel.ExtrinsicGroupMeasureSorterPanel - Class in infomat.view.sorter
SorterPanel.ExtrinsicGroupMeasureSorterPanel(SorterPanel, IObjectSet, String) - Constructor for class infomat.view.sorter.SorterPanel.ExtrinsicGroupMeasureSorterPanel
SorterPanel.GroupInfo - Class in infomat.view.sorter
SorterPanel.GroupInfo(InfomatView, int, IObjectGrouping, IObjectGroup, HashMap<IObjectGroup, Measure>, boolean) - Constructor for class infomat.view.sorter.SorterPanel.GroupInfo
SorterPanel.GroupingInfo - Class in infomat.view.sorter
SorterPanel.GroupingInfo(IObjectGrouping, InfomatModel, IObjectSet) - Constructor for class infomat.view.sorter.SorterPanel.GroupingInfo
SorterPanel.Groups - Class in infomat.view.sorter
SorterPanel.Groups(IObjectGrouping, boolean, HashMap<IObjectGroup, Measure>) - Constructor for class infomat.view.sorter.SorterPanel.Groups
SorterPanel.GroupsHeader - Class in infomat.view.sorter
SorterPanel.GroupsHeader(SorterPanel.SorterMethodPanel) - Constructor for class infomat.view.sorter.SorterPanel.GroupsHeader
SorterPanel.Ordering - Class in infomat.view.sorter
SorterPanel.Ordering(InfomatModel, InfomatView, SorterPanel) - Constructor for class infomat.view.sorter.SorterPanel.Ordering
SorterPanel.SorterMethodPanel - Class in infomat.view.sorter
SorterPanel.SorterMethodPanel(SorterPanel) - Constructor for class infomat.view.sorter.SorterPanel.SorterMethodPanel
SorterPanel.SortingChoicePanel - Class in infomat.view.sorter
SorterPanel.SortingChoicePanel(SorterPanel) - Constructor for class infomat.view.sorter.SorterPanel.SortingChoicePanel
sortFirstIndex(Comparator<? super F>) - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
sortGatheredToSelected(boolean) - Method in class infomat.view.pixel.PixelFrame
sortGatheredToSelected(boolean, boolean) - Method in class infomat.view.pixel.PixelFrame
sortGroupingByGroupMeasureMap(IObjectGrouping, HashMap<IObjectGroup, Measure>, boolean) - Static method in class infomat.vectorspace.MeasureSorter
sortInCurrentVectorOrderWithInvertedOrderNumberAsValue() - Method in class infomat.vectorspace.IObjectGroup
sortInCurrentVectorOrderWithInvertedOrderNumberAsValue() - Method in class infomat.vectorspace.IObjectSet
sortingChoicePanel - Variable in class infomat.view.sorter.SorterPanel
sortingMeasureOptions - Variable in class infomat.view.sorter.SorterPanel.SortingChoicePanel
sortInLexicalOrderWithinClusters(Vector<IObjectGroup>) - Static method in class infomat.vectorspace.Sorter
sortInOrderValueOrder() - Method in class infomat.vectorspace.IObjectGroup
  Sorts the IObjects in the vector "ordered" according to the values they have.
sortInRandomOrderWithinClusters(Vector<IObjectGroup>) - Static method in class infomat.vectorspace.Sorter
sortInSimOrderWithinClusters(ISimilarity, Vector<IObjectGroup>) - Static method in class infomat.vectorspace.Sorter
sortInvert() - Method in class infomat.vectorspace.vector.IVector
sortLiteral() - Method in class infomat.vectorspace.vector.IVector
sortMeasureVectorInStampOrder() - Method in class mro.util.measures.AverageMeasure
sortNames - Variable in class infomat.view.vector.IVectorPanel.OrderSelectionPanel
sortRandom() - Method in class infomat.vectorspace.vector.IVector
sortRowColB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
sortRowRowB - Variable in class infomat.view.pixel.PixelFrame.RemovePanel
sortSecondIndex(Comparator<? super S>) - Method in class mro.util.doublehashmap.GenericOrderedDoubleHashMap
SparseDotSimilarity - Class in infomat.vectorspace.similarity
  DotSimilarity.
SparseDotSimilarity() - Constructor for class infomat.vectorspace.similarity.SparseDotSimilarity
SparseDotSimilarity(SparseDotSimilarity) - Constructor for class infomat.vectorspace.similarity.SparseDotSimilarity
SparseDotSimilarity(IMatrix, boolean) - Constructor for class infomat.vectorspace.similarity.SparseDotSimilarity
SparseDotSimilarity(IMatrix, boolean, Properties) - Constructor for class infomat.vectorspace.similarity.SparseDotSimilarity
SparseISimilarity - Class in infomat.vectorspace.similarity
  Similarity measure for sparse IMatrix.
SparseISimilarity() - Constructor for class infomat.vectorspace.similarity.SparseISimilarity
SparseISimilarity(SparseISimilarity) - Constructor for class infomat.vectorspace.similarity.SparseISimilarity
SparseLiteralSimilarity - Class in infomat.vectorspace.similarity
  The literal similarity.
SparseLiteralSimilarity() - Constructor for class infomat.vectorspace.similarity.SparseLiteralSimilarity
SparseLiteralSimilarity(SparseLiteralSimilarity) - Constructor for class infomat.vectorspace.similarity.SparseLiteralSimilarity
SparseOverlapSimilarity - Class in infomat.vectorspace.similarity
SparseOverlapSimilarity() - Constructor for class infomat.vectorspace.similarity.SparseOverlapSimilarity
SparseOverlapSimilarity(SparseOverlapSimilarity) - Constructor for class infomat.vectorspace.similarity.SparseOverlapSimilarity
SparseOverlapSimilarity(IMatrix, boolean) - Constructor for class infomat.vectorspace.similarity.SparseOverlapSimilarity
SparseOverlapSimilarity(IMatrix, boolean, Properties) - Constructor for class infomat.vectorspace.similarity.SparseOverlapSimilarity
SparsePartPicture - Class in infomat.view.picture
SparsePartPicture(Dimension, int, int, int, int, IObjectGroup, IObjectGroup) - Constructor for class infomat.view.picture.SparsePartPicture
sparsePicture - Variable in class infomat.view.InfomatOverview
sparsePicture - Variable in class infomat.view.InfomatView
sparsePicture - Variable in class infomat.view.picture.Guide
sparsePicture - Variable in class infomat.view.picture.SparsePartPicture
SparsePicture - Class in infomat.view.picture
  A SparsePicture is a projection of a IMatrix meant to be visualized as a picture.
SparsePicture(IMatrix, Dimension, int, int, int, int) - Constructor for class infomat.view.picture.SparsePicture
SparsePictureConstructor - Class in infomat.view.picture
SparsePictureConstructor() - Constructor for class infomat.view.picture.SparsePictureConstructor
SparsePixel - Class in infomat.view.picture
  A SparsePixel is a non zero pixel in a SparsePartPicture.
SparsePixel(int, int, Color, IMatrixCell) - Constructor for class infomat.view.picture.SparsePixel
SparsePixel(int, int, int, int, Color, IMatrixCell) - Constructor for class infomat.view.picture.SparsePixel
SparsePixel.IMatrixCellWeightComparator - Class in infomat.view.picture
SparsePixel.IMatrixCellWeightComparator() - Constructor for class infomat.view.picture.SparsePixel.IMatrixCellWeightComparator
sparsePixels - Variable in class infomat.view.picture.SparsePartPicture
split(IObjectGroup, GroupingAlgorithm, int, int) - Method in class infomat.algorithms.grouping.TopDownSplitter
splitAccordingToGrouping(IMatrix, IObjectGrouping) - Method in class infomat.algorithms.matrix.IMatrixSplitter
splitAccordingToTwoGroupingsAlongDifferentDimensions(IMatrix, IObjectGrouping, IObjectGrouping) - Method in class infomat.algorithms.matrix.IMatrixSplitter
splitAlongBothDimensions(IMatrix, int, int) - Method in class infomat.algorithms.matrix.IMatrixRandomSplitter
  Both are hard splits.
splitAlongDimension(IMatrix, boolean, int) - Method in class infomat.algorithms.matrix.IMatrixRandomSplitter
  Splits along rows or columns.
splitFileNameAtSeparators(String) - Static method in class mro.util.PathHelper
stamp - Variable in class infomat.evaluation.Evaluation
stamp - Variable in class infomat.evaluation.ExtrinsicEvaluation
stamp - Variable in class infomat.evaluation.IntrinsicEvaluation
stamp - Variable in class infomat.evaluation.MatrixMeasures
stamp - Variable in class mro.util.measures.Measure
  An "identifier" for the Measure, for making it easier to compare and manipulate Measure:s.
stamp - Variable in class mro.util.measures.MeasuresHandler
standardBackground - Static variable in class infomat.view.grouping.settings.GroupingColoring
standardForground - Static variable in class infomat.view.grouping.settings.GroupingColoring
startElement(String, String, String, Attributes) - Method in class infomat.bridges.jsdm.RIIO.RIHandler
startElement(String, String, String, Attributes) - Method in class infomat.io.IMatrixIO.IMatrixHandler
startElement(String, String, String, Attributes) - Method in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
startElement(String, String, String, Attributes) - Method in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
startElement(String, String, String, Attributes) - Method in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
startElement(String, String, String, Attributes) - Method in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
startElement(String, String, String, Attributes) - Method in class infomat.mro.synlex.SynlexIO.SynlexHandler
startElement(String, String, String, Attributes) - Method in class infomat.vectorspace.CorpusIO.CorpusHandler
startElement(String, String, String, Attributes) - Method in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
startElement(String, String, String, Attributes) - Method in class mro.util.experimentation.ResultTableStructureHandler
startElement(String, String, String, Attributes) - Method in class mro.util.experimentation.TableHandler
startElement(String, String, String, Attributes) - Method in class mro.util.measures.MeasuresHandler
startElement(String, String, String, Attributes) - Method in class mro.util.properties.PropertiesHandler
startElementPartXML(StringBuffer, String) - Method in class mro.util.UniqueIdentifier
  Use when defining a `DefaultHandler` to parse a larger XML-file where a UniqueIdentifier is a part.
startElementPartXML(StringBuffer, String) - Method in interface mro.util.XMLPartIO
  Use when defining a `DefaultHandler` to parse a larger XML-file where the implementing class is a part.
stateChanged(ChangeEvent) - Method in class infomat.view.grouping.settings.OpacityPanel
staticPrint(Object) - Static method in class mro.util.TracePrinter
staticPrintln(Object) - Static method in class mro.util.TracePrinter
staticPrintln() - Static method in class mro.util.TracePrinter
staticPrintPartDTD(PrintWriter) - Static method in class mro.util.UniqueIdentifier
  Prints the DTD for a UniqueIndentifier.
std - Variable in class mro.util.measures.AverageMeasure
  The standard deviation.
std - Variable in class mro.util.properties.PropertyAverage
stem - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
stopIObjects - Variable in class infomat.vectorspace.Stoplist
stopIObjectsFromStrings() - Method in class infomat.view.tools.StoplistFrame
stoplist(Properties, PropertiesPool, IMatrix) - Static method in class infomat.Clusterer
stoplist() - Method in class infomat.mro.Experimentator
stoplist() - Method in class infomat.mro.ExperimentatorNumberOfWords
stoplist() - Method in class infomat.mro.ExperimentatorReductionReduction
Stoplist - Class in infomat.vectorspace
  A stoplist.
Stoplist() - Constructor for class infomat.vectorspace.Stoplist
Stoplist(Properties) - Constructor for class infomat.vectorspace.Stoplist
Stoplist(String) - Constructor for class infomat.vectorspace.Stoplist
Stoplist(Properties, String) - Constructor for class infomat.vectorspace.Stoplist
stoplist() - Method in class infomat.view.InfomatModel
STOPLIST - Static variable in class infomat.view.menu.Menu
stoplist - Variable in class infomat.view.tools.StoplistFrame
stoplist - Variable in class infomat.view.vector.IVectorPanel
stoplistFrame - Variable in class infomat.view.InfomatModel
StoplistFrame - Class in infomat.view.tools
  A stoplist tool.
StoplistFrame(IMatrix, InfomatModel, InfomatView) - Constructor for class infomat.view.tools.StoplistFrame
StoplistFrame.SmallButton - Class in infomat.view.tools
StoplistFrame.SmallButton(String) - Constructor for class infomat.view.tools.StoplistFrame.SmallButton
STOPLISTFRAME_PREFERRED_SIZE - Variable in class infomat.view.tools.StoplistFrame
stoplistPanel - Variable in class infomat.view.tools.StoplistFrame
STOPLISTPANELS_PREFERRED_SIZE - Variable in class infomat.view.tools.StoplistFrame
stoplistToIO - Variable in class infomat.view.tools.StoplistFrame
stopStringIO - Variable in class infomat.vectorspace.Stoplist
stopStrings - Variable in class infomat.vectorspace.Stoplist
string - Variable in class infomat.vectorspace.vector.IVectorString
string - Variable in class mro.util.properties.PropertiesHandler
stringAmbiguousIObjectsMap - Variable in class infomat.vectorspace.IObjectSet
stringCompareTo(IObject) - Method in class infomat.vectorspace.IObject
stringIObjectMap - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
stringIObjectMap - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
stringNumberMap - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
stringObjectMap - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
stringProj - Variable in class infomat.io.TextWordIMatrixConstructor
strings - Variable in class infomat.view.util.AlternatingButton
stringsPanel - Variable in class infomat.view.tools.StoplistFrame
stringWordObjectMap - Variable in class infomat.io.TextDirectoryReader
stringWordObjectMap - Variable in class infomat.io.TextWordIMatrixConstructor
strIOMap - Variable in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
strIOMap - Variable in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
subGroup(IObject, IObject) - Method in class infomat.vectorspace.IObjectGroup
  Returns the part of the group that starts with fromObject and ends with toObject, in the same oreder as this group.
subMatrix(IObjectGroup, IObjectGroup) - Method in class infomat.vectorspace.IMatrix
  Returns a copy of the specified portion of the matrix.
subtract(T, Float) - Method in class infomat.vectorspace.vector.IVector
  Subtracts this value from the value for the T.
subtract(IVector<T>) - Method in class infomat.vectorspace.vector.IVector
  Uses the subtract(T, Float) method.
subtract(HashMap<T, Float>) - Method in class infomat.vectorspace.vector.IVector
  Uses the subtract(T, Float) method.
subtract(AverageMeasure) - Method in class mro.util.measures.AverageMeasure
subtract(AverageMeasureGroup) - Method in class mro.util.measures.AverageMeasureGroup
subtract(Measure) - Method in class mro.util.measures.Measure
subtract(MeasureGroup) - Method in class mro.util.measures.MeasureGroup
sweStoplistFileName - Static variable in class infomat.mro.Experimentator
sweStoplistFileName - Static variable in class infomat.mro.ExperimentatorNumberOfWords
sweStoplistFileName - Static variable in class infomat.mro.ExperimentatorReductionReduction
sweStoplistFileName - Static variable in class infomat.mro.JohanPrepare
sweStoplistFileName - Static variable in class infomat.mro.NegationClusterer
sweStoplistFileName - Static variable in class infomat.mro.WTClusterer
sweStoplistFileName - Static variable in class infomat.mro.WTExperimentator
SynlexExample - Class in infomat.mro.synlex
  Simple class for running clustering without the GUI.
SynlexExample() - Constructor for class infomat.mro.synlex.SynlexExample
SynlexGrouper - Class in infomat.mro.synlex
SynlexGrouper() - Constructor for class infomat.mro.synlex.SynlexGrouper
SynlexIO - Class in infomat.mro.synlex
  For loading a token file into a matrix with the texts as rows and words as columns.
SynlexIO() - Constructor for class infomat.mro.synlex.SynlexIO
SynlexIO.SynlexHandler - Class in infomat.mro.synlex
  Exports the IMatrix in XML format The file is saved in compressed .zip-format.
SynlexIO.SynlexHandler() - Constructor for class infomat.mro.synlex.SynlexIO.SynlexHandler

## T

Table<V> - Class in mro.util.experimentation
  A class for handling xml tables.
Table() - Constructor for class mro.util.experimentation.Table
table - Variable in class mro.util.experimentation.TableHandler
TableHandler - Class in mro.util.experimentation
  Class used for XML-parsing of `Table`-objects.
TableHandler() - Constructor for class mro.util.experimentation.TableHandler
task - Variable in class infomat.view.ProgressFrame
tds - Variable in class infomat.algorithms.grouping.BisectingKMeans
Test - Class in infomat
  Simple class for running clustering without the GUI.
Test() - Constructor for class infomat.Test
Test - Class in infomat.view.vector
  Simple class for testing IVectorPanel.
Test(IObjectGroup) - Constructor for class infomat.view.vector.Test
TEST_PREFERRED_SIZE - Static variable in class infomat.view.vector.Test
TextDirectoryReader - Class in infomat.io
  For reading a set of texts from a directory (and its subdirectories).
TextDirectoryReader() - Constructor for class infomat.io.TextDirectoryReader
TextDirectoryReader(TextWordIMatrixConstructor) - Constructor for class infomat.io.TextDirectoryReader
textField - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
textField - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
textField - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
textFileable - Variable in class infomat.view.vector.IVectorPanel
textFileChooser - Variable in class infomat.view.vector.IVectorPanel
textFileChooserPath - Variable in class infomat.view.vector.IVectorPanel
TextFileFilter - Class in infomat.io
TextFileFilter() - Constructor for class infomat.io.TextFileFilter
textHeight - Static variable in class infomat.view.grouping.settings.GroupingSettingsPanel
textHeight - Static variable in class infomat.view.sorter.SorterPanel
textLoadable - Variable in class infomat.view.vector.IVectorPanel
textLoadB - Variable in class infomat.view.vector.IVectorPanel
textObject - Variable in class infomat.io.TextWordIMatrixConstructor
textObject - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
textSaveable - Variable in class infomat.view.vector.IVectorPanel
textSaveB - Variable in class infomat.view.vector.IVectorPanel
textTitle - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
TextWordIMatrixConstructor - Class in infomat.io
  For constructing a text-word-IMatrix.
TextWordIMatrixConstructor() - Constructor for class infomat.io.TextWordIMatrixConstructor
TextWordIMatrixConstructor(IMatrix, SparseISimilarity) - Constructor for class infomat.io.TextWordIMatrixConstructor
tff - Static variable in class infomat.io.TextDirectoryReader
TFIDFWeighter - Class in infomat.vectorspace.weighting
  A class for weighting of a IMatrix.
TFIDFWeighter() - Constructor for class infomat.vectorspace.weighting.TFIDFWeighter
TFIDFWeighter(Properties) - Constructor for class infomat.vectorspace.weighting.TFIDFWeighter
TFWeighter - Class in infomat.vectorspace.weighting
  A class for weighting of a IMatrix.
TFWeighter() - Constructor for class infomat.vectorspace.weighting.TFWeighter
TFWeighter(Properties) - Constructor for class infomat.vectorspace.weighting.TFWeighter
thePanel - Variable in class infomat.view.InfomatOverview
threadID - Variable in class mro.util.UniqueIdentifier
  The Thread in which the UniqueIdentifier was created.
time - Variable in class infomat.io.textresult.IObjectGroupingTextResult
time - Variable in class mro.util.UniqueIdentifier
  The creation time of the UniqueIdentifier.
title - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
title - Variable in class infomat.view.info.DimensionInfoPanel.InfoLabel
titleBorder - Variable in class infomat.view.info.DimensionInfoPanel
titleBorder - Variable in class infomat.view.info.PixelInfoPanel
toggleColumnGrid(boolean) - Method in class infomat.view.InfomatView
toggleDraw() - Method in class infomat.view.picture.Guide
toggleGroupingPanel() - Method in class infomat.view.SessionPanel
toggleGuide() - Method in class infomat.view.InfomatModel
toggleGuide() - Method in class infomat.view.InfomatView
toggleOverview() - Method in class infomat.view.InfomatView
toggleOverview() - Method in class infomat.view.SessionPanel
togglePixelFrame() - Method in class infomat.view.InfomatModel
toggleRowGrid(boolean) - Method in class infomat.view.InfomatView
toggleShowGathered() - Method in class infomat.view.pixel.PixelFrame
toggleShowRemove() - Method in class infomat.view.pixel.PixelFrame
toggleShowSelected() - Method in class infomat.view.pixel.PixelFrame
toggleSimilarityFrame() - Method in class infomat.view.InfomatModel
toggleToolbar() - Method in class infomat.view.SessionPanel
  Toggle if the toolbar should be visible or hidden
toggleVisible() - Method in class infomat.view.pixel.PixelFrame
toggleVisible() - Method in class infomat.view.similarity.SimilarityFrame
TokenFileTextWordIO - Class in infomat.io
  For loading a token file into a matrix with the texts as rows and words as columns.
TokenFileTextWordIO() - Constructor for class infomat.io.TokenFileTextWordIO
TokenFileTextWordIO(TextWordIMatrixConstructor) - Constructor for class infomat.io.TokenFileTextWordIO
TokenFileTextWordIO.TokenFileTextWordHandler - Class in infomat.io
  Exports the IMatrix in XML format The file is saved in compressed .zip-format.
TokenFileTextWordIO.TokenFileTextWordHandler(TextWordIMatrixConstructor) - Constructor for class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
toolbarController - Variable in class infomat.view.menu.Menu
ToolbarController - Class in infomat.view.menu
  Controller of the toolbar.
ToolbarController(InfomatView) - Constructor for class infomat.view.menu.ToolbarController
toolbarController - Variable in class infomat.view.SessionPanel
TOOLBARONOFF - Static variable in class infomat.view.menu.Menu
toolbarView - Variable in class infomat.view.InfomatOverview
toolbarView - Variable in class infomat.view.InfomatView
ToolbarView - Class in infomat.view.menu
  Displayer of the toolbar.
ToolbarView(ToolbarController, InfomatModel) - Constructor for class infomat.view.menu.ToolbarView
  Create the buttons for the toolbar.
toolbarView - Variable in class infomat.view.picture.SparsePartPicture
toolbarView - Variable in class infomat.view.picture.SparsePicture
toolbarView - Variable in class infomat.view.SessionPanel
ToolbarView.InfoPanel - Class in infomat.view.menu
ToolbarView.InfoPanel() - Constructor for class infomat.view.menu.ToolbarView.InfoPanel
TOOLS - Static variable in class infomat.view.menu.Menu
topDownClusteringNumber - Static variable in class infomat.algorithms.grouping.TopDownSplitter
TopDownSplitter - Class in infomat.algorithms.grouping
  Top-Down-Splitter.
TopDownSplitter() - Constructor for class infomat.algorithms.grouping.TopDownSplitter
TopDownSplitter(Properties) - Constructor for class infomat.algorithms.grouping.TopDownSplitter
toSmall - Variable in class infomat.view.picture.SparsePartPicture
toSmall() - Method in class infomat.view.picture.SparsePartPicture
toString() - Method in class infomat.vectorspace.vector.IVector
toString() - Method in class infomat.view.picture.SparsePixel
toString() - Method in class mro.util.measures.MeasureGroup
toString() - Method in class mro.util.properties.PropertyGroup
toString() - Method in class mro.util.UniqueIdentifier
  Just for printing to screen.
totalLocalCount - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
totalLocalCount - Variable in class infomat.vectorspace.IObjectGroupCalculator
totalLocalWeightInGroupByGroup(IObjectGroup, IObjectGroup, IMatrix, boolean, Properties) - Static method in class infomat.vectorspace.weighting.TFIDFWeighter
  Returns the sum of the local weight as calculated in #localWeightInGroupByGroup.
totalLocalWeightInGroupByGroup(IObjectGroup, IObjectGroup, IMatrix, boolean, Properties) - Static method in class infomat.vectorspace.weighting.TFWeighter
  Returns the sum of the local weight as calculated in #localWeightInGroupByGroup.
tp - Variable in class infomat.view.algorithms.MatrixFilterFrame
tp - Variable in class infomat.view.algorithms.MatrixWeightingFrame
tp - Variable in class infomat.view.menu.Menu
tp - Static variable in class infomat.view.picture.SparsePictureConstructor
traceOn - Static variable in class infomat.view.picture.SparsePictureConstructor
traceOn - Variable in class mro.util.TracePrinter
traceOnStatic - Static variable in class mro.util.TracePrinter
TracePrinter - Class in mro.util
  For convenient trace printing.
TracePrinter(boolean) - Constructor for class mro.util.TracePrinter
twmc - Variable in class infomat.io.TextDirectoryReader
twmc - Variable in class infomat.io.TokenFileTextWordIO.TokenFileTextWordHandler
twmc - Variable in class infomat.io.TokenFileTextWordIO
type - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler

## U

unaryLabels - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
unDraw() - Method in class infomat.view.picture.Guide
unHold() - Method in class infomat.view.info.PixelInfoFrame
UniqueIdentifiable - Interface in mro.util
UniqueIdentifier - Class in mro.util
  A UniqueIdentifier for an object based on the Class name and two longs: the current system time and the current thread ID.
UniqueIdentifier() - Constructor for class mro.util.UniqueIdentifier
  Constructor.
UniqueIdentifier(Object) - Constructor for class mro.util.UniqueIdentifier
  Constructor.
UniqueIdentifier(String) - Constructor for class mro.util.UniqueIdentifier
  Constructor.
UniqueIdentifier(UniqueIdentifier) - Constructor for class mro.util.UniqueIdentifier
  Copy constructor.
UniqueIdentifier(long, long, Object) - Constructor for class mro.util.UniqueIdentifier
  Constructor.
UniqueIdentifier(long, long, String) - Constructor for class mro.util.UniqueIdentifier
  Constructor.
UniqueIdentifierException - Exception in mro.util
  Signals that there is a mismatch in UniqueIdentifiers.
UniqueIdentifierException() - Constructor for exception mro.util.UniqueIdentifierException
update(Observable, Object) - Method in class infomat.view.evaluation.EvaluationSelectionPanel
  Called by the Observable
update(Observable, Object) - Method in class infomat.view.group.GroupFrame
  Called by the Observable
update(Observable, Object) - Method in class infomat.view.grouping.GroupingPanel
  Called by the Observable
update(Observable, Object) - Method in class infomat.view.grouping.settings.GroupingSettingsPanel
  Called by the Observable
update(Observable, Object) - Method in class infomat.view.info.DimensionInfoPanel
update() - Method in class infomat.view.InfomatModel
update(Observable, Object) - Method in class infomat.view.InfomatView
  Called by the Observable
update(Observable, Object) - Method in class infomat.view.picture.SparsePicture
update(Observable, Object) - Method in class infomat.view.pixel.PixelPanel
  Called by the Observable
update(Observable, Object) - Method in class infomat.view.similarity.SimilarityFrame
  Called by the Observable
update() - Method in class infomat.view.similarity.SimilarityManager
update(Observable, Object) - Method in class infomat.view.sorter.SorterPanel
  Called by the Observable
useRelative - Variable in class infomat.view.tools.ExportTextFrame

## V

val - Variable in class infomat.io.IObjectGroupingIO.IObjectGroupingHandler
val - Variable in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
val - Variable in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
validateIMatrixBorders() - Method in class infomat.view.InfomatView
value - Variable in class infomat.view.vector.IVectorIndexPanel
value - Variable in class mro.util.measures.Measure
value - Variable in class mro.util.measures.MeasuresHandler
value - Variable in class mro.util.properties.PropertiesHandler
value - Variable in class mro.util.properties.Property
value - Variable in class mro.util.properties.PropertyValueDescription
valueDescription - Variable in class mro.util.properties.PropertyValueDescription
valueDescriptions - Variable in class mro.util.properties.PropertiesHandler
valueDescriptions - Variable in class mro.util.properties.Property
valueLabel - Variable in class mro.util.measures.dialog.MeasuresPanel.MeasurePanel
valueLabel - Variable in class mro.util.properties.dialog.PropertiesPanel.PropertyPanel
values() - Method in class mro.util.doublehashmap.DoubleHashMap
  Returns all Objects in the DoubleHashMap as a Vector.
values() - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Returns all Objects in the DoubleHashMap as a Vector.
valuesForFirstIndex(Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Returns a Vector of those value Objects that are stored with the specified "first" index.
valuesForFirstIndex(F) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Returns a Vector of those value Objects that are stored with the specified "first" index.
valuesForSecondIndex(Object) - Method in class mro.util.doublehashmap.DoubleHashMap
  Returns a Vector of those value Objects that are stored with the specified "second" index.
valuesForSecondIndex(S) - Method in class mro.util.doublehashmap.GenericDoubleHashMap
  Returns a Vector of those value Objects that are stored with the specified "second" index.
valueString() - Method in class mro.util.properties.PropertyAverage
vClass - Variable in class mro.util.doublehashmap.GenericDoubleHashMap
vec - Variable in class infomat.view.vector.IVectorPanel
vector - Variable in class infomat.io.IVectorIO.IVectorOfIObjectsHandler
vector - Variable in class infomat.io.OldIVectorIO.IVectorOfIObjectsHandler
vectors - Variable in class infomat.algorithms.grouping.IVectorCategorizer
VERSION - Static variable in class infomat.InfomatGUI
view - Variable in class infomat.view.algorithms.AlgorithmFrame
view - Variable in class infomat.view.algorithms.LabelFrame
view - Variable in class infomat.view.algorithms.MatrixFilterFrame
view - Variable in class infomat.view.algorithms.MatrixWeightingFrame
view - Variable in class infomat.view.evaluation.EvaluationSelectionPanel
view - Variable in class infomat.view.group.GroupFrame
view - Variable in class infomat.view.grouping.GroupingPanel
view - Variable in class infomat.view.grouping.GroupingSelectionPanel
view - Variable in class infomat.view.grouping.settings.GroupingFilePanel
view - Variable in class infomat.view.grouping.settings.GroupingSettingsManager
view - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.ColorChanger
view - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.GroupInfo
view - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel.Ordering
view - Variable in class infomat.view.grouping.settings.GroupingSettingsPanel
view - Variable in class infomat.view.grouping.settings.OpacityPanel
view - Variable in class infomat.view.info.DimensionInfoPanel
view - Variable in class infomat.view.info.PixelInfoFrame
view - Variable in class infomat.view.info.PixelInfoPanel
view - Variable in class infomat.view.InfomatModel
view - Variable in class infomat.view.InfomatOverview
view - Variable in class infomat.view.picture.SparsePicture
view - Static variable in class infomat.view.picture.SparsePictureConstructor
view - Variable in class infomat.view.pixel.PixelFrame
view - Variable in class infomat.view.pixel.PixelPanel
view - Variable in class infomat.view.SessionPanel
view - Variable in class infomat.view.sorter.SorterFrame
view - Variable in class infomat.view.sorter.SorterPanel.GroupInfo
view - Variable in class infomat.view.sorter.SorterPanel.Ordering
view - Variable in class infomat.view.sorter.SorterPanel
view - Variable in class infomat.view.tools.EvaluationFrame.EvaluationPanel
view - Variable in class infomat.view.tools.MatrixSummaryFrame
view - Variable in class infomat.view.tools.StoplistFrame
viewGathered - Variable in class infomat.view.pixel.PixelFrame
viewRemove - Variable in class infomat.view.pixel.PixelFrame
viewSelected - Variable in class infomat.view.pixel.PixelFrame
visible - Variable in class infomat.view.info.PixelInfoFrame
visible - Variable in class infomat.view.InfomatOverview
visible - Variable in class infomat.view.pixel.PixelFrame
visible - Variable in class infomat.view.similarity.SimilarityFrame
vocabulary - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
vy - Variable in class infomat.view.menu.ToolbarController

## W

w1 - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
w2 - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
weight(PropertiesPool, IMatrix) - Static method in class infomat.Clusterer
weight - Variable in class infomat.io.IMatrixIO.IMatrixHandler
weight() - Method in class infomat.mro.Experimentator
weight() - Method in class infomat.mro.ExperimentatorNumberOfWords
weight() - Method in class infomat.mro.ExperimentatorReductionReduction
weight - Variable in class infomat.mro.synlex.SynlexIO.SynlexHandler
weight - Variable in class infomat.vectorspace.CorpusIO.CorpusHandler
weight - Variable in class infomat.vectorspace.DocumentGroupingIO.DocumentGroupingHandler
weight - Variable in class infomat.vectorspace.IMatrixCell
weight(IMatrix) - Method in class infomat.vectorspace.weighting.CountWeighter
  Weight the IMatrix (the whole matrix, which may be more than the current IObjectGroupings, the picture).
weight(IMatrix) - Method in class infomat.vectorspace.weighting.TFIDFWeighter
  Weight the IMatrix (the whole matrix, which may be more than the current IObjectGroupings, the picture).
weight(IMatrix) - Method in class infomat.vectorspace.weighting.TFWeighter
  Weight the IMatrix (the whole matrix, which may be more than the current IObjectGroupings, the picture).
weight(IMatrix) - Method in class infomat.vectorspace.weighting.Weighter
  Weight the IMatrix (the whole matrix, which may be more than the current IObjectGroupings, the picture).
weight - Variable in class infomat.view.picture.SparsePixel
weightedAvgGroupGroupingSimilarity(IObjectGrouping) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
weightedAvgSelfSimilarity(Vector<IObjectGroup>) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
  Uses getGroupRepresentation() in the ISimilarity.
weightedAvgSelfSimilarity(IObjectGrouping) - Method in class infomat.evaluation.IntrinsicGroupEvaluation
weighter - Variable in class infomat.algorithms.labeling.WeightRankingBoostLabeler
weighter - Variable in class infomat.mro.Experimentator
Weighter - Class in infomat.vectorspace.weighting
  A class for weighting of a IMatrix.
Weighter() - Constructor for class infomat.vectorspace.weighting.Weighter
Weighter(Properties) - Constructor for class infomat.vectorspace.weighting.Weighter
weighter - Variable in class infomat.view.algorithms.MatrixWeightingFrame
weighterFrame - Variable in class infomat.view.algorithms.MatrixWeightingSelectionPanel
weighterNames - Static variable in class infomat.view.algorithms.MatrixWeightingSelectionPanel
weightingScheme - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
weightLabel - Variable in class infomat.view.info.PixelInfoPanel.CellPanel
weightMatrix() - Method in class infomat.view.InfomatModel
WEIGHTMATRIX - Static variable in class infomat.view.menu.Menu
WeightRankingBoostLabeler - Class in infomat.algorithms.labeling
  Constructs ILabels for IObjectGroups.
WeightRankingBoostLabeler(Weighter, IMatrix, boolean) - Constructor for class infomat.algorithms.labeling.WeightRankingBoostLabeler
WeightRankingBoostLabeler(Properties, Weighter, IMatrix, boolean) - Constructor for class infomat.algorithms.labeling.WeightRankingBoostLabeler
WIDTH - Variable in class infomat.view.InfomatOverview
WIDTH - Variable in class infomat.view.InfomatView
WINDOWS - Static variable in class infomat.view.menu.Menu
wordObject - Variable in class infomat.io.TextWordIMatrixConstructor
wordsIndexed - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
wrap(IObjectGroup) - Method in class infomat.bridges.jsdm.JSDMWrapper
writeAverageMeasuresFiles() - Method in class infomat.mro.ExperimentResultGenerator
writeAverageMeasuresFiles() - Method in class mro.util.experimentation.ExperimentResultGenerator
writeFile(IVector<IVectorString>, String) - Method in class infomat.io.IVectorStringIO
  Write strings to a text file with one string per row.
writeFile(IVector<IVectorString>, File) - Method in class infomat.io.IVectorStringIO
writeFile(String) - Method in class infomat.vectorspace.Stoplist
  Write strings to a text file with one string per row.
writeFile(File) - Method in class infomat.vectorspace.Stoplist
writeFiles() - Method in class infomat.mro.FileConverter
writeFullClusteringResult(PropertiesPool, IMatrix, IObjectGrouping, String, long) - Static method in class infomat.Clusterer
writeMatlabVector(IObjectGrouping, float, String) - Static method in class infomat.mro.synlex.SynlexExample
WriteProperties - Class in infomat
  Writes the default Properties of several classes to a directory.
WriteProperties() - Constructor for class infomat.WriteProperties
writeTextClusteringResult(PropertiesPool, IMatrix, IObjectGrouping, SparseISimilarity, String, long) - Static method in class infomat.Clusterer
WTClusterer - Class in infomat.mro
  Simple class for running clustering without the GUI.
WTClusterer() - Constructor for class infomat.mro.WTClusterer
WTExperimentator - Class in infomat.mro
  Simple class for running clustering without the GUI.
WTExperimentator() - Constructor for class infomat.mro.WTExperimentator

## X

x - Variable in class infomat.view.picture.SparsePixel
xLast - Variable in class infomat.view.picture.SparsePixel
xmlFF - Variable in class mro.util.measures.Averagor
xmlFF - Variable in class mro.util.properties.PropertiesPool
XMLFileFilter - Class in mro.util.properties
XMLFileFilter() - Constructor for class mro.util.properties.XMLFileFilter
XMLHelper - Class in mro.util
  A helper class.
XMLHelper() - Constructor for class mro.util.XMLHelper
XMLPartIO - Interface in mro.util
  Interface for classes that are easily handled as parts of XML files.
xslGroupFileName - Variable in class infomat.io.textresult.IObjectGroupingTextResult
xslGroupingFileName - Variable in class infomat.io.textresult.IObjectGroupingTextResult

## Y

y - Variable in class infomat.view.picture.SparsePixel
yLast - Variable in class infomat.view.picture.SparsePixel

## Z

zoom(IObject, IObject, int) - Method in class infomat.view.InfomatView
zoom(InfomatView, IMatrix, Dimension, int, int, int, int) - Static method in class infomat.view.picture.SparsePictureConstructor
ZOOM_IN_FACTOR - Static variable in class infomat.view.InfomatView
ZOOM_OUT_FACTOR - Static variable in class infomat.view.InfomatView
ZOOMIN - Static variable in class infomat.view.menu.ToolbarController
ZOOMRECT_COLOR - Static variable in class infomat.view.InfomatOverview
ZOOMSELECTION - Static variable in class infomat.view.menu.Menu
ZOOMSELECTION - Static variable in class infomat.view.menu.ToolbarController

## _

_context - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_docfrequency - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_foundCV - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_inVocabulary - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_meta_data - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_negs - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_poss - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_termfrequency - Variable in class infomat.bridges.jsdm.RIIO.RIHandler
_word - Variable in class infomat.bridges.jsdm.RIIO.RIHandler

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