Recent publications

A brain-wide atlas of synapses across the mouse lifespan

Mélissa Cizeron, Zhen Qiu, Babis Koniaris, Ragini Gokhale, Noboru H. Komiyama, Erik Fransén, Seth G. N. Grant.

Science, Published online 11 Jun 2020.


Architecture of the Mouse Brain Synaptome

Fei Zhu, Mélissa Cizeron, Zhen Qiu, Ruth Benavides-Piccione, Maksym V. Kopanitsa, Nathan G. Skene, Babis Koniaris, Javier DeFelipe, Erik Fransén, Noboru H. Komiyama, Seth G.N. Grant.

Neuron, Published online: August 2, 2018.


Read more about highlights in our research here...

Active projects

Dynamical biomarkers in Parkinson’s disease

This project is part of dBrain, a consortium supported by DigitalFutures, KTH

The aim is to provide health care professionals with tools supporting diagnostic and prognostic assessments. We use machine learning methods to extract features from eye-tracking and MEG data obtained from Parkinson’s patients and healthy volunteers. Parkinson’s disease is characterized by problems pertaining to movements, however cognitive and sleep perturbations often occurr too. Eye-tracking has become a very successful tool when assessting reading deficits (dyslexia) and is currently explored with relation to a number of neurological and psychiatrical disorders. Parkinson’s patients may show several characteristical differences in eye movements compared to healty volunteers. Furthermore, one aspect of Parkinson’s patients motor dysfunction is tremor, shaking of the limbs. This has an origin in the brain where particular brain-waves are altered. MEG is a method to measure brain oscillations to find alterations in location or oscillation frequency and hence analysis of this data also provides important information.

Mechanisms of postsynaptic density function

This project is conducted in collaboration with Seth Grant, Center for Clinical Brain Sciences, Edinburgh University.

The recipient side of excitatory neuronal communication, synaptic spines, are characterized by a postsynaptic density consisting of an assembly of proteins. These take part in transmission of the signal evoked by receptor activation and subsequent generation of biochemical and electrical activity. Changes to the efficacy of this transmission is generally assumed to be of central importance to learning and memory. We study by using computational modeling the amplitude (roughly the efficacy of this transmission) and in particular duration of changes to this efficacy. We are interested in the relationship between molecular events in the postsynaptic density to changes and their duration. We are also studying more principal functions of the molecular assembly as an information-processing device.

Previous projects

Mechanisms of chronic peripheral pain

This project is conducted in collaboration with Martin Schmelz, Translational pain research, Heidelberg University.

Acute pain is relatively well treated by today's pain killers or compounds like lidocaine. However, for treatment of chronic pain, there is a large unmet need for new drugs. Research is in part unsuccessful due to the lack of an understanding of what changes in ion channels underlie the changes in excitability of peripheral nerves. One of the key problems is that the intracellular membrane potential of these nerves is not experimentally accessible. The present project uses computational neuroscience to construct a model of a peripheral nerve, a C-fiber. We are thereby able to provide a causal link between ion channel function and function of the axon, as well as between changes in ion channels and pathological changes in disease.

Biomolecular target design using computational search strategies

This project is conducted in collaboration with AstraZeneca R&D Södertälje.

In this project, we develop a computational search method to design ion channels so that they can achieve optimal physiological/terapeutical effect on cell or network function. The project currently evaluates direct search strategies to find optimal characteristics. In each cycle of the procedure, new channel parameters are set, next biophysical simulations include the channel in the cells of the network/system at study. From the simulations, resulting physiological function is measured/evaluated. Based on this evaluation, new parameters are computed using the search method.

Reducing epileptogenic activity using modulation of dendritic potassium channels

Synchronous activity is an integral part of brain function. At the single neuron level, there may under normal conditions be mechanisms that maximizes processing while proving sufficient safety margins to undesirable hypersynchronous states such as epilepsy. In this project using quantitative modeling we are studying the possibility of controlling a neurons bias to respond to synchronous synaptic input by adding a novel potassium current. Experimentally, pharmacological manipulation of endogenous ion channel types, or genetic knock-in of new channels, might provide possible ways of implementing our results.

Intrinsic cellular mechanisms of memory

In learning and memory it has recently become clear that in addition to synaptic plasticity there are cellular changes in excitability due to changes in ion channels. The project focuses on cationic (TRP) currents which are known from in vitro studies to produce long-lasting depolarizing plateau potentials. Further, these currents are activated by group I metabotropic glutamate receptors as well as muscarinic type 1 receptors, and blocking of these receptors have been shown to produce behavioral deficits in long-term and working memory experiments. In the project, we combine pharmacological, electrophysiological and modeling techniques.