Van-Dang NGUYEN
    Ph.D. Applied Mathematics, Ph.D Cand. Computer Science


 PUBLICATIONS

Preprints


  1. V.-D. Nguyen, J. Jansson, Hoang Trong An Tran, J. Hoffman, Jing-Rebecca Li, Diffusion MRI simulation in thin-layer and thin-tube media using a discretization on manifolds

  2. With J. Jansson et al., Direct finite element simulation of turbulent flow for marine based renewable energy



Peer reviewed journals


  1. V.-D. Nguyen, J. Jansson, J. Hoffman, A. Goude, Direct Finite Element Simulation of the Turbulent Flow Past a Parked Vertical Axis Wind Turbine. Renewable Energy, December 2018.

  2. V.-D. Nguyen, J. Jansson, J. Hoffman, J.-R. Li, A partition of unity finite element method for computational diffusion MRI, J. Comput. Phys., August 2018.

  3. B. Tie, A.-S. Mouronval, V.-D. Nguyen, L. Series, D. Aubry, A unified variational framework for the space discontinuous Galerkin method for elastic wave propagation in anisotropic and heterogeneous media, Computer Methods in Applied Mechanics and Engineering, ISSN 0045-7825, April 2018.

  4. F. Caubet, H. Haddar, J.-R. Li, and D. V. Nguyen, New Transmission Condition Accounting For Diffusion Anisotropy In Thin Layers Applied To Diffusion MRI, ESAIM: M2AN 2016.

  5. H. T. Nguyen, D. Grebenkov, D. V. Nguyen, C. Poupon, D. Le Bihan, J.-R. Li. Parameter estimation using macroscopic diffusion MRI signal models, Physics in Medicine and Biology. 60 3389 (2015).

  6. D. V. Nguyen, D. S. Grebenkov, D. Le Bihan, and J.-R. Li, Numerical study of a cylinder model of diffusion MRI signal for neuronal dendrite trees, Journal of Magnetic Resonance, ISSN 1090-7807 (2015).

  7. J.-R. Li, H. T. Nguyen, D. V. Nguyen, H. Haddar, J. Coatleven and D. Le Bihan, Numerical study of a macroscopic finite pulse model of the diffusion MRI signal, Journal of Magnetic Resonance, ISSN 1090-7807 (2014).

  8. D. S. Grebenkov, D. V. Nguyen, and J.-R. Li, Exploring diffusion across permeable barriers at high gradients. I. Narrow pulse approximation, Journal of Magnetic Resonance, ISSN 1090-7807 (2014).

  9. D. V. Nguyen, J.-R. Li, D. S. Grebenkov, and D. Le Bihan, A finite elements method to solve the Bloch-Torrey equation applied to diffusion magnetic resonance imaging, J. Comput. Phys. 263, 283-302 (2014).

  10. D. V. Nguyen, J.-R. Li, D. S. Grebenkov, and D. Le Bihan, Modeling the diffusion magnetic resonance imaging signal inside neurons, J. Phys.: Conf. Ser. 490 012013 (2014).

  11. D. V. Nguyen, D. S. Grebenkov, C. Poupon, D. Le Bihan, and J.-R. Li, Effective diffusion tensor computed by homogenization, Diff. Fundam. 18 (9), 1-6 (2013)



Conference papers


  1. D. Wassermann, V.-D. Nguyen, G. G.-Diez, J.-R. Li, W. Cai, and V. Menon, Sensing Spindle Neurons in the Insula with Multi-shell Diffusion MRI, ISMRM 2018.

  2. V.-D. Nguyen, J. Jansson, T. Frachon, N. C. Degirmenci, J. Hoffman, A fluid-structure interaction model with weak slip velocity conditions on conforming internal interfaces, ECCM-ECFD2018

  3. V. D. Nguyen, J. Jansson, M. Leoni, . Janssen, A. Goudez, and J. Hoffman, Modelling of rotating vertical axis turbines using a multiphase finite element method, MARINE 2017.

  4. D. V. Nguyen, J. Jansson, J. Hoffman, A FENICS-HPC framework for multi-compartment Bloch-Torrey models, ECCOMAS Congress 2016.

  5. D. V. Nguyen, D. S. Grebenkov, C. Poupon, D. Le Bihan, and J.-R. Li, Effective diffusion tensor computed by homogenization, In Proceedings 20th ISMRM Conference, Melbourne, 2012.

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Conference presentations & abstracts


  1. V.-D. Nguyen, J. Jansson, N. C. Degirmenci, J. Hoffman, An XFEM Approach for Mesh Conforming Interface Conditions with FEniCS-HPC, FEniCS'18. abstract, poster

  2. V.- D. Nguyen, N.-C. Degirmenci, B. Janssen , J. Jansson, A. Goude, T. Bakhos, J. Hoffman A Nitsche approach for weak slip boundary conditions to simulate the fluid-structure interaction of rotating vertical axis turbines, X-DMS 2017, Umeå, Sweden 2017. (Oral Presentation)

  3. V.-D. Nguyen, J. Jansson, M. Leoni, . Janssen, A. Goudez, and J. Hoffman, Modelling of rotating vertical axis turbines using a multiphase finite element method, MARINE2017, Nantes, France 2017. (Oral Presentation)

  4. D. V. Nguyen, J. Jansson, J. Hoffman and J.-R. Li A FEniCS-HPC Framework for Simulating Diffusion in Heterogeneous Media, CSE17, Atlanta, USA 2017. (Oral Presentation)

  5. M. Leoni, J. Hoffman, J. Jansson, V.-D. Nguyen, and J. Spühler Adaptive Turbulence Simulations with Moving Domains and Multi-Phase Flow, with Application in Biomechanics and Renewable Energy, CSE17, Atlanta, USA 201.

  6. M. Moragues, D. Castanon, J. Jansson, L. Saavedra, V.-D. Nguyen , N. C. Degirmenci, E. Krishnasamy, and J. Hoffman, Simulation of the HarshLab floating platform for offshore experimentation using FEniCS-HPC, 19h International Conference on Finite Elements in Flow Problems - FEF 2017

  7. J. Jansson, J. Spühler, N. C. Degirmenci, V.- D. Nguyen, J. Hoffman, Framework for Fluid-Structure Interaction with Contact and its Applications in Biomechanics, ECCOMAS 2016, Greece.

  8. D. V. Nguyen, J. Jansson, J. Hoffman, A FENICS-HPC framework for multi-compartment Bloch-Torrey models, ECCOMAS Congress, Greece 2016. (Oral Presentation)



Others


  1. V.-D. Nguyen, High Performance Finite Element Methods with Application to Simulation of Diffusion MRI and Vertical Axis Wind Turbines, Licentitate thesis in computer science

  2. D. V. Nguyen, A finite elements method to solve the Bloch-Torrey equation applied to diffusion magnetic resonance imaging of biological tissues. PhD thesis, Applied Mathematics, Ecole Polytechnique X, 2014.

  3. D. V. Nguyen and A. Juneja, Implementation of MPI-based conjugate gradient methodfor solving the Poisson equation on Cartesian grid, Summer School project, Sept 2015.