PUBLICATIONS for Jeanette Hellgren Kotaleski
(please send an email
for questions)
- Articles (contributions in refereed journals):
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Klaus A, Planert H, Hjorth JJ, Berke JD, Silberberg G, Kotaleski JH (2011) Striatal fast-spiking interneurons: from firing patterns to postsynaptic impact,
Frontiers Syst Neurosci. 5:57
PubMed
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Kamali Sarvestani I, Lindahl M, Hellgren-Kotaleski J, Ekeberg O (2011) The arbitration-extension hypothesis: a hierarchial interpretation of the functional organization of the Basal Ganglia,
Front Sys Neurosci. 5:13
PubMed
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Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML (2010) Postsynaptic signal transduction models for long-term potentiation and depression,
Frontiers Computational Neurosci. 4:152
PubMed
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Kotaleski JH, Blackwell KT (2010) Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches,
Nature Reviews Neurosci. 11:239-251
PubMed
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Djurfeldt M, Hjorth J, Eppler JM, Dudani N, Heliaz M, Potjans TC, Bhalla US, Diesmann M, Kotaleski JH, Orjan Ekeberg (2010) Run-Time Interoperability Between Neuronal Network simulators Based on the MUSIC Framework,
Neuroinformatics, 8:43-60
PubMed
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Kozlov A, Huss M, Lansner A, Kotaleski JH, Grillner S (2009) Simple cellular and network control principles govern complex patterns of motor behavior,
PNAS, 106(47):20027-32
PubMed
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Halnes G, Ulfhielm E, Eklof Ljunggren E, Kotaleski JH, Rospars JP (2009) Modelling and sensitivity analysis of the reactions involving receptor, G-protein and effector in vertrebrate olfactory receptor neurons ,
J Comput Neurosci 27:471-491 PubMed
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Sandstrom M, Lansner A, Hellgren-Kotaleski J, Rospars JP (2009) Modeling the response of a population of olfactory receptor neurons to an odorant ,
J Comput Neurosci, 27:337-355 PubMed
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Hjorth J, Blackwell KT, Kotaleski JH (2009) Gap junctions between striatal fast-spiking interneurons regulate spiking activity and synchronization as a function of cortical activity ,
J Neurosci, 29:5276-86 PubMed
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Huss M, Wang D, Trane C, Wikstrom M, Hellgren Kotaleski J (2008) An experimentally constrained computational model of NMDA oscillations in lamprey CPG neurons ,
J Comput Neurosci, 25:108-21 PubMed
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Grillner S, Kozlov A, Dario P, Stefanini C, Menciassi A, Lansner A, Hellgren Kotaleski J (2007) Modeling a vertebrate motor system: pattern generation, steering and control of body orientation ,
Prog Brain Res, 165:221-34 PubMed
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Huss M, Lansner A, Wallen P, El Manira A, Grillner S, Kotaleski JH (2007) Roles of ionic currents in lamprey CPG neurons: a modeling study ,
J Neurophysiol, 97:2696-711 PubMed
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Kozlov AK, Lansner A, Grillner S, Hellgren Kotaleski J (2007) A hemicord locomotor network of excitatory interneurons: a simulation study ,
Biol Cybern,
96:229-43 PubMed
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Hjorth J, Hanna Elias A, Hellgren Kotaleski J (2007) The significance of gap junction location in striatal fast spiking interneurons , Neurocomputing 70:1887-1891 Link
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Sandström M, Hellgren Kotaleski J, Lansner A (2007) Scaling effects in a model of the olfactory bulb Neurocomputing 70:1802-1807 Link
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Samuelsson E, Hellgren Kotaleski J (2007) Exploring GABAergic and dopaminergic effects in a minimal model of a medium spiny projection neuron Neurocomputing 70:1615-1618 Link
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Westermark PO, Hellgren Kotaleski J, Grill V, Björklund A, Lansner A (2007) A mathematical model of the
mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell
Am J PhysiolEndocrinol Metab,
292:E373-93 PubMed
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Lindskog M, Kim MS, Wikström MA, Blackwell KT, Hellgren Kotaleski J (2006) Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation
PLoS Computational Biology,
2(9):e119 PubMed
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Sandström M, Hjorth J, Lansner A, Hellgren Kotaleski J (2006) The impact of the
distribution of isoforms on CaMKII activation Neurocomputing 69:1010-1013 Link
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Huss M, Cangiano L, Hellgren Kotaleski J (2006) Modelling self-sustained rhythmic
activity in lamprey hemisegmental networks Neurocomputing 69:1097-1102 Link
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Kotaleski JH, Plenz D, Blackwell KT (2006) Using potassium currents to
solve signal noise problems in inhibitory feedforward networks of the striatum.
Journal of
Neurophysiology 95:331-41 PubMed
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Grillner S, Kozlov A, Kotaleski JH (2005) Integrative neuroscience:
linking levels of analyses.
Current
Opinion in Neurobiology, 15:614-21 PubMed
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Grillner S, Kotaleski JH, Menard A, Saitoh K, Wikström M (2005)
Mechanisms for selection of basic motor programs--roles for the striatum and pallidum.
Trends in
Neuroscience 28:364-70 PubMed
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De Schutter E, Ekeberg Ö, Hellgren Kotaleski J, Archard P, Lansner A (2005)
Biophysically detailed modelling of microcircuits and beyond. Trends in
Neuroscience 28:562-9 PubMed
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Hellgren Kotaleski J, Plenz D, Blackwell KT (2005) The role
of background synaptic noise in striatal fast spiking
interneurons. Neurocomputing, 65-66:727-732 Link
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Svantesson A, Westermark PO, Kotaleski JH, Gharizadeh B, Lansner A, Nyren P (2004)
A mathematical model of the Pyrosequencing reaction system. Biophysical
Journal 110:129-45 PubMed
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Westermark PO, Hellgren Kotaleski J, Lansner A (2004)
Derivation of a reversible Hill equation with modifiers affecting
catalytic properties, WSEAS Transactions on Biology and Biomedicine 1:91-98
pdf
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Westermark PO, Hellgren Kotaleski J, Lansner A (2004)
Glucose-stimulated insulin secetion - Insights from modelling Recent Res. Devel. Biophys. 3:325-350 or pdf
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Hallen K, Huss M, El Manira A, Kettunen P, Hellgren Kotaleski J (2004)
mGluR-mediated calcium oscillations in the lamprey - a computational model.
Neurocomputing 58-60:431-35 Link
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Huss M, Lamotte d'Incamps B, El Manira A, Lansner A, Hellgren
Kotaleski J (2003)
Role of A-current in lamprey locomotor network neurons.
Neurocomputing, 52-54: 295-300 Link
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Kotaleski JH, D Lester, KT Blackwell (2002) Subcellular
interactions between parallel fibre and climbing fibre signals in Purkinje
cells predict sensitivity of classical conditioning to interstimulus
interval. Integr Physiol Behav Sci, 37:265-292 PubMed or pdf
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Hellgren Kotaleski J, KT Blackwell (2002) Sensitivity to
interstimulus
interval due to calcium interactions in the Purkinje cell spines.
Neurocomputing, 44-46:13-18 Link
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Kozlov AK, Aurell E, Orlovsky GN, Deliagina TG, Zelenin PV,
Hellgren-Kotaleski J, Grillner S
(2001) Modeling postural control in the lamprey.
Biological Cybernetics, 84: 323-330 PubMed
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Kozlov AK, Kotaleski JH, Aurell E, Grillner S, Lansner A (2001)
Modeling of substance P and 5-HT induced synaptic plasticity in the
lamprey spinal CPG - consequences for network
pattern generation. Journal of
Computational Neuroscience 11:183-200
PubMed
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Yang K-H, Hellgren Kotaleski J, Blackwell KT (2001) The role of
protein
kinase C in the biochemical pathways of classical conditioning.
Neurocomputing, 38-40:79-85 Link
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Hellgren Kotaleski J, Krieger, P (2000)
Simulation of metabotropic glutamate receptor induced effects in the
lamprey CPG.
Neurocomputing 32-33:433-439 Link
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Kozlov A, Hellgren Kotaleski J, Aurell E, Grillner S, Lansner A (2000)
Modeling of plasticity of the synaptic connections in the lamprey
spinal CPG - consequences for
network behavior. Neurocomputing 32-33:441-446 Link
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Kozlov A, Aurell E, Deliagina T, Grillner S, Hellgren-Kotaleski J,
Orlovsky G, Zelenin P.
(2000). Modeling control of roll-plane body orientation in lamprey.
Neurocomputing 32-33:871-877 Link
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Krieger P, Hellgren-Kotaleski J, P Kettunen, El Manira AJ (2000)
Interaction between metabotropic and ionotropic glutamate receptors
regulates neuronal network activity. Journal of
Neuroscience 20:5382-5391
PubMed
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Kotaleski JH, Grillner S, Lansner A (1999) Neural mechanisms
potentially contributing to the intersegmental phase lag in lamprey.
I: Segmental oscillations dependent on reciprocal inhibition.
Biological Cybernetics 81: 317-330
PubMed
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Kotaleski JH, Lansner A, Grillner S (1999) Neural mechanisms
potentially contributing to the intersegmental phase lag in lamprey.
II: Hemisegmental oscillations produced by mutually
coupled excitatory neurons. Biological Cybernetics 81: 299-315
PubMed
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Hellgren Kotaleski J, Tegner J, Lansner A, Grillner S (1999)
Control of burst proportion and frequency range by drive-dependent
modulation of adaptation.
Neurocomputing, 26-27: 185-191 Link
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Tegnér J, Hellgren Kotaleski J (1999) The synaptic NMDA component
desynchronizes neural bursters. Neurocomputing, 26-27: 557-563
Link
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Ullström M, Kotaleski JH, Tegnér J, Aurell E, Grillner S,
Lansner A (1998)
Activity dependent modulation of adaptation produces a constant burst
proportion in a lamprey neural network model.
Biological Cybernetics 79:1-14
PubMed
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Tegnér J, Hellgren-Kotaleski J, Lansner A, Grillner S (1997) Low
voltage
activated calcium channels in the lamprey locomotor network -
simulation and experiment. Journal of
Neurophysiology
77:1795-1812 PubMed
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Wadden T, Hellgren J, Lansner, Grillner S (1997) Intersegmental
coordination in the lamprey: Simulations using a network model
without segmental boundaries. Biological Cybernetics 76:1-9
Link
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Wikström M, Hill RH, Hellgren J, Grillner S (1995) The action of
5-HT on
calcium-dependent potassium channels and on the spinal locomotor network in
lamprey is mediated by 5-HT1A-like
receptors. Brain Res 678:191-199 PubMed
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Brodin L, Shupliakov O, Pieribone V, Hellgren J, Hill RH (1994) The
reticulospinal glutamate synapse in lamprey: plasticity and presynaptic
variability. Journal of
Neurophysiology 72: 592-604 PubMed
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Hellgren J, Grillner S, Lansner A (1992) Computer simulation of the
segmental neural network generating locomotion in lamprey by using
populations of network interneurons. Biological Cybernetics 68:1-13
PubMed
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Hellgren J, Kellerth J-O (1989) A physiological study of the
monosynaptic
reflex responses of cat spinal alpha-motoneurons after lumbusacral
deafferentation. Brain Res 488:149-162
PubMed
- Books, review articles, book chapters, technical reports:
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Lindskog M, Halnes G, Olieveira RF, Hellgren Kotaleski J, Blackwell KT (2010) Biochemical networks in psychiatric disease, In: Systems biology in Psychiatric Research: From High-Throughput data to mathematical modeling,
Eds: Tretter F, Gebicke-Haerter PJ, Mendoza E, Winterer G; ISBN-10:3-527-32503-4 - Wiley-VCH.
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Svantesson A, Nordstrom T, Hellgren Kotaleski J, Nyren P (2005) An investigation of the Apyrase Step in the Pyrosequencing Model: Combining Experiments and Simulations, Dept. of Numerical Analysis and Computing Science, KTH, TRITA-NA-P0509
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Svantesson A, Westermark PO, Nyren P, Hellgren Kotaleski J (2005) Towards an Improved Polymerase Description in the Pyrosequencing Model, Dept. of Numerical Analysis and Computing Science, KTH, TRITA-NA-P0510
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Blackwell KT, Hellgren Kotaleski J (2002) Modeling the dynamics of
second messenger pathways, In: Neuroscience Databases: a Practical Guide,
Ed R Kötter, Kluwer Academic Publishers, Norwell, MA. pdf
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Hellgren Kotaleski J, Lansner A (1999) Modeling Cellular Processes -
Bioinformatics beyond Sequences. Dept. of Numerical Analysis and
Computing Science, Kungliga Tekniska Högskolan,
TRITA-NA-P9906.
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Lansner A, Kotaleski JH, Grillner S (1998) Modeling
the spinal
circuitry underlying locomotion in a lower vertebrate. In: Neuronal
Mechanisms for Generating Locomotor Activity
(eds: Kiehn O, Harris-Warrick R M, Jordan L M, Hultborn H, Kodo N),
Ann. N. Y. Acad. Sci. 860:239-249 (invited paper) PubMed
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Hellgren Kotaleski J (1998) Modeling of Bursting Mechanisms and
Coordination in a spinal Pattern Generator. PhD thesis,
Department of Numerical Analysis and Computing Science, Kungliga
Tekniska Högskolan, Stockholm, TRITA-NA-9810.
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Hellgren J. (1989) A Physiological and Morphological Study of the
Plasticity of Primary Afferent Projections to the Cat Spinal Motor
Nuclei Following Partial Lumbosacral Deafferentation.
Licentiate thesis, Department of anatomy, University of Umeå.
- Conferences, abstracts, etc:
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Fino E, Paille V, Du K, Morera Herreras T, Hellgren Kotaleski J, Venance L (2011)
GABA operates as a Hebbian/anti-Hebbian switch for spike-timing-dependent plasticity , SFN poster 348.03/N5
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Brandi M, Brocke E, Talukdar HA, Hanke M, Bhalla US, Djurfeldt M, Kotaleski J (2011) Multiscale modeling through MUSIC multi-simulation: Modeling a dendritic spine using MOOSE and NeuroRD, 4th INCF Congress, Boston
Link
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Lindahl M, Kotaleski J (2011) Short term plasticity within the basal ganglia - a systems level computational investigation , BMC Neuroscience 2011, 12(Suppl 1):P145 (CNS 2011)
Link
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Brandi M, Brocke E, Talukdar HA, Hanke M, Bhalla US, Kotaleski J, Djurfeldt M (2011) Connecting MOOSE and NeuroRD through MUSIC: towards a communication framework for multi-scale modeling , BMC Neuroscience 2011, 12(Suppl 1):P77 (CNS 2011)
Link
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Paille V, Du K, Deniau J-M, Hellgren Kotaleski J, Fino E, Venance L (2010) GABAergic microcircuits govern the corticostriatal spike-timing dependent plasticity, IBAGS X Abstract
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Lindahl M, Hellgren Kotaleski J (2010) Action selection in the basal ganglia - a computational investigation, FENS Abstract
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Hjorth J, Blackwell KT, Hellgren Kotaleski J (2010) FS networks as population detectors of correlated input activity, IBAGS X (abstract, invited talk)
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Hellgren Kotaleski J, Grillner S (2010) Networks in motion - bridging between intrinsic mechanisms and systems level function (invited talk, symposium at Colegio Nacional in Mexico City, March 2010)
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Hellgren Kotaleski J (2010) The functions of the striatal microcircuitry - a modeling approach (invited talk, FENS)
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Ericsson J, Stephenson-Jones MR, Samuelsson E, Robertson B, Hill RH, Hellgren-Kotaleski J, Grillner S (2010) The lamprey provides a vertebrate blueprint of the mammalian basal ganglia FENS Abstract
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Robertson B, Jones M, Samuelsson E, Hill R, Hellgren J, Grillner S (2009) The lamprey basal ganglia - A vertebrate blue-print Society for Neuroscience Abstract, 17-21 Oct, Chicago (poster, abstract)
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Evans RC, Du K, Sheehan T, Hellgren Kotaleski J, Blackwell KT (2009) Effects of NMDA receptor NR2 subunit on calcium concentration Society for Neuroscience Abstract, 17-21 Oct, Chicago (poster, abstract)
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Klaus A, Hjorth J, Hellgren Kotaleski J (2009) The influence of stuttering properties for firing activity in pairs of electrically coupled striatal fast-spiking interneurons 2nd INCF Congress of Neuroinformatics, 6-8 Sept, Pilsen (poster, abstract)
Link
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Samuelsson E, Hill R, Hellgren-Kotaleski J (2009) The basal ganglia output stage in the lamprey - a combined experimental and modeling study 2nd INCF Congress of Neuroinformatics, 6-8 Sept, Pilsen (poster, abstract)
Link
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Hellgren Kotaleski J (2009) Modelling of motor systems including the dynamics in intracellular signaling networks involved in learning and synaptic plasticity British Neuroscience Association Meeting 2009, Liverpool (invited talk, abstract)
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Samuelsson E, Hill R, Hellgren Kotaleski J (2009) Exploration of the lamprey pallidal neurons - a combined computational and experimental study CNS 2009, 18-23 July, Berlin, Germany (poster)
Link
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Klaus A, Hjorth J, Hellgren-Kotaleski J (2009) The influence of subthreshold membrane potential oscillations and GABAergic input on firing activity in striatal fast-spiking neurons CNS 2009, 18-23 July, Berlin, Germany (poster)
Link
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Klaus A, Kotaleski JH (2008) Synchronization effects between striatal fast-spiking interneurons forming networks with different topologies 1st INCF Congress of Neuroinformatics, Sept, Stockholm (poster, abstract)
Link
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Hjorth J, Krieger P, Oliveira RF, Blackwell KT, Kotaleski JH (2008) GABAergic control of dendritic calcium dynamics in striatal medium spiny neurons 1st INCF Congress of Neuroinformatics, Sept, Stockholm (poster, abstract)
Link
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Hjorth J, Blackwell KT, Hellgren Kotaleski J (2008) Gap junctions on striatal fast spiking interneurons reduce firing for non-correlated inputs Society for Neuroscience Abstract, 15-19 Nov, Washington DC, (poster, abstract)
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Halnes G, Ulfhielm E, Kotaleski JH, Rospars JP (2008) Modeling of the receptor, G-protein and effector reactions in vertebrate olfactory receptor neurons CNS 2008, 19-24 July, Portland, Oregon, US (selected for oral presentation)
Link
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Hjorth J, Zilberter M, Oliveira RF, Blackwell KT, Hellgren Kotaleski J (2008) GABAergic control of backpropagating action potentials in striatal medium spiny neurons CNS 2008, 19-24 July, Portland, Oregon, US (poster)
Link
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Ritz R, Hellgren Kotaleski J, Strandberg P, Larsson A, Lillberg Y, Chatzopoulou E, Holm P, Naeslund M, Wang H, Bjaalie JG (2008) A new software center for the neuroinformatics community CNS 2008, 19-24 July, Portland, Oregon, US (poster)
Link
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Hjorth J, Hedlund L, Blackwell KT, Hellgren Kotaleski J (2008) Synchronization effects in networks of striatal fast spiking interneurons - role of gap junctions (invited for oral presentation) In: Proceedings of the International Conference on Cognitive Neurodynamics, ICCN 2007, Link
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Hellgren Kotaleski J (2007) Subcellular temporal computation and its role for synaptic plasticity IBAGS IX, The Netherlands (invited talk)
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Hellgren Kotaleski J, Lindskog M, Blackwell KT (2005) Effect of temporal pattern on dopamine activated second messenger pathways, Soc Neurosci. Abstr.
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Hellgren Kotaleski J, Lindskog M, Blackwell KT (2004) DARPP-32 acts as a temporal integrator - Results from a computer model,
(abstract, IBAGS VIII, Scotland)
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Hellgren Kotaleski J, Plenz D, Blackwell KT (2004) Background inputs and KA current influence firing of striatal fast spiking interneurons,
Soc Neurosci. Abstr. (selected for oral presentation)
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Hellgren Kotaleski J, Blackwell KT (2002) Organization of synatic inputs to striatal fast spiking interneurons,
Soc Neurosci. Abstr.
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Lindskog M, Blackwell KT, Wikstrom M Hellgren Kotaleski J (2002) A kinetic model on DARPP-32 and the PKA/PP1 cascade,
Soc Neurosci. Abstr.
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Yang K-H, Hellgren Kotaleski J, Blackwell KT (2000) The role of
protein
kinase C in the temporal specificity of Purkinje cells,
Soc Neurosci. Abstr 26:718. (poster and abstract at
Neuroscience meeting, New Orleans, 2000)
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Hellgren Kotaleski J, Lansner A, Grillner S (1998)
Production of phase lag in chains of neural networks oscillating through
an escape mechanism. In:
Computational Neuroscience: Trends in Research, Plenum Press, ed:
J M Bower, p 65-70.
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Lansner A, Hellgren Kotaleski J, Ullström M, Grillner S (1998)
Local spinal modulation of the calcium dependent potassium channel
underlying slow adaptation in a model of the lamprey CPG.
In: Computational Neuroscience: Trends in Research, Plenum
Press, ed: J M Bower, p 429-434.
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Ullström M, Lansner A, Hellgren Kotaleski J, Grillner S (1998)
Significance of modulated adaptation for rhythm generation and
intersegmental co-ordination in lamprey.
In: Computational Neuroscience, Trends in research, Plenum Press,
New York, ed: J. Bower, pp:561-565 (Computation and Neural systems
1997, Big Sky, Montana, Oral presentation 20 min by Ullström)
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Lansner A, Hellgren Kotaleski J, Ullström M, Grillner S (1997)
Modulating the calcium dependent potassium conductance in a model of the
lamprey CPG. In: Computational Neuroscience, Trends in research,
Plenum Press, New York, ed: J. Bower, pp:365-370
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Tegnér J, Hellgren Kotaleski J, Lansner A, Grillner S (1997) A
computational and experimental study of rebound firing and modulatory
effects on the lamprey spinal network.
In: Computational Neuroscience, Trends in research, Plenum Press,
New York, ed: J. Bower,
pp:519-524
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Tegnér J, Hellgren Kotaleski J, Lansner A, Grillner S (1996)
Computer
simulations of low voltage activated calcium channels in the lamprey spinal
network. Nordisk Förenings för Fysiologi vårmöte, KI, Stockholm
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Wadden T, Hellgren J, Lansner, Grillner S (1996) Intersegmental
coordination in the lamprey:
Simulations using a continuous network model.
Nordisk Förenings för Fysiologi vårmöte, KI,
Stockholm
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Wadden T, Hellgren J, Lansner, Grillner S (1995) Simulations of the
intersegmental coordination during swimming in the lamprey using a continuous
network model. In: Neurobiology of Computation.
The Proceedings of the Third Annual Computation and Neural Systems Conference,
ed: J M Bower, Kluwer Academic Publisher,
pp 353-358.
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Hellgren J, Wadden A, Lansner, Grillner S (1994) A continuous
network
model of the lamprey swimming rhythm generator - intersegmental
coordination. Soc Neurosci. Abstr 20:1592.
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Hill R, Hellgren J, Grillner S (1994) Whole cell voltage
clamp techniques
in intact lamprey spinal cord and brainstem
(Nordiska Föreningen i Göteborg, maj)
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Wikström M, Hellgren J, Hill RH, Grillner S (1994) A 5-HT1A
like receptor
modulates fictive locomotion and the slow AHP in the lamprey. 3rd
inphar satellite meeting on serotonin, Chicago 94
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Wikström M, Hellgren J, Hill RH, Grillner S (1994) 5-HT1A like
receptors
modulates network output pattern for locomotion
(Nordiska Fysiologiska Föreningen, Göteborg, maj)
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Wikström M, Hellgren J, Hill RH, Grillner S (1993) Classification
of the
receptor responsible for the 5-HT effect on Ca-dependent K-channels in
the lamprey. Suppl no6. Eur J Neurosci, p 108
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Hellgren J, Kellerth J-O (1987) Reflex plasticity following lesion of
afferent input versus target neurons. Suppl to Neuroscience,
vol 22, p. 221