Uses of Class
moj.similarity.SimilarityMeasure

Packages that use SimilarityMeasure

moj.similarity.measures

Uses of SimilarityMeasure in moj.similarity.measures

Subclasses of SimilarityMeasure in moj.similarity.measures

class	BaroniUrbaniS_row BARONI-URBANI SIMILARITY COEFFICIENT http://www.biology.ualberta.ca/jbrzusto/cluster.html#DistanceMeasures
class	BinAverageSquaredD_row AVERAGE SQUARED DISTANCE http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html dissimilarity [0, 1]; same as binary euclidean distance of http://149.170.199.144/multivar/dist.htm Usage: for binary data.
class	BinCAS_row CA MEASURE OF ASSOCIATION http://www.psych.cornell.edu/Darlington/crosstab/table3.htm CA (for "conditional association") is a modification of OGE that in principle can be defined for tables of any size, but in practice is computed easily only for 2x2 tables, so we explain it in those terms.
class	BinCosineS_row BINARY COSINE COEFFICIENT http://www.iro.umontreal.ca/~nie/IR-book/Ch.3.html Usage: for binary data.
class	BinCramerPhiS_row CRAMER PHI MEASURE OF ASSOCIATION http://www.psych.cornell.edu/Darlington/crosstab/table3.htm The Cramer phi and phi2 are simple transformations of the familiar Pearson chi-square statistic for testing association in a frequency table.
class	BinCramerPhiSquaredS_row CRAMER PHI SQUARED MEASURE OF ASSOCIATION http://www.psych.cornell.edu/Darlington/crosstab/table3.htm Goodman and Kruskal (1979, p.
class	BinDiceD_row BINARY DICE DISTANCE http://www.iro.umontreal.ca/~nie/IR-book/Ch.3.html Dissimilarity coefficient that satisfies the triangle inequality Usage: for binary data.
class	BinDispersionS_row BINARY DISPERSION COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html Usage: for binary data.
class	BinEuclidD_row BINARY EUCLIDEAN DISTANCE http://149.170.199.144/multivar/dist.htm
class	BinOchiai1S_row BINARY OCHIAI 1 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] (Ochiai 1957) Usage: for binary data.
class	BinOchiai2S_row BINARY OCHIAI 2 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html Usage: for binary data.
class	BinOGES_row OGE MEASURE OF ASSOCIATION http://www.psych.cornell.edu/Darlington/crosstab/table3.htm OGE has a frequency interpretation that many users will find more appealing than the ratio-scale interpretation of phi2.
class	BinOverlapS_row BINARY OVERLAP COEFFICIENT http://www.iro.umontreal.ca/~nie/IR-book/Ch.3.html Usage: for binary data.
class	BinPatternDiffD_row BINARY PATTERN DIFFERENCE http://149.170.199.144/multivar/dist.htm http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html
class	BinPearsonCorrS_row BINARY PEARSON CORRELATION COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [-1, 1] Usage: for binary data.
class	BinRogersTanimotoS_row BINARY ROGERS & TANIMOTO SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] (Rogers Tanimoto 1960) Usage: for binary data.
class	BinRusselRaoS_row BINARY RUSSEL & RAO SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] (Russel & Rao 1940) Usage: for binary data.
class	BinShannonD_row BINARY SHANNON DISSIMILARITY http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html dissimilarity [0, INF] Usage: for binary data.
class	BinShapeDiffD_row BINARY SHAPE DIFFERENCE http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html Usage: for binary data.
class	BinSizeDiffD_row BINARY SIZE DIFFERENCE http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html Usage: for binary data.
class	BinSokalSneath1S_row BINARY SOKAL & SNEATH 1 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] (Sokal & Sneath 1963) Usage: for binary data.
class	BinSokalSneath2S_row BINARY SOKAL & SNEATH 2 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] (Sokal & Sneath 1963) Usage: for binary data.
class	BinSokalSneath3S_row BINARY SOKAL & SNEATH 3 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, inf] Usage: for binary data.
class	BinSokalSneath4S_row BINARY SOKAL & SNEATH 4 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] Usage: for binary data.
class	BinSokalSneath5S_row BINARY SOKAL & SNEATH 5 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1] Usage: for binary data.
class	BinSqEuclidD_row BINARY SQUARED EUCLIDEAN DISTANCE http://149.170.199.144/multivar/dist.htm
class	BinVarianceD_row BINARY VARIANCE http://149.170.199.144/multivar/dist.htm http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html similarity [0, 1]
class	BrayCurtisD_row BRAY-CURTIS DISTANCE http://www.biology.ualberta.ca/jbrzusto/cluster.html#DistanceMeasures
class	CanberraD_row CANBERRA METRIC Algorithm taken from (distance.c): http://geochange.er.usgs.gov/pub/tools/analog/archives/analog.tar.Z
class	CircleProductS_row CIRCLE PRODUCT SIMILARITY COEFFICIENT Marquardt, W.H.
class	CircleProductT_row CIRCLE PRODUCT SIMILARITY TRANSFORMATION Marquardt, W.H.
class	CosineD_row COSINE DISTANCE MEASURE Originally written by P.
class	CzekanowskiS_row CZEKANOWSKI SIMILARITY http://ag.arizona.edu/classes/rnr555/lecnotes/10.html
class	DiceS_row DICE SIMILARITY COEFFICIENT
class	EuclidD_row EUCLIDEAN DISTANCE
class	GoodmanKruskalGammaS_row GOODMAN-KRUSKAL GAMMA MEASURE OF ASSOCIATION http://www.psych.cornell.edu/Darlington/crosstab/table5.htm Similarity [-1, 1].
class	InclusionS_row INCLUSION SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html Usage: for binary data.
class	JaccardS_row JACCARD SIMILARITY COEFFICIENT (e.g., Jaccard 1912, The distribution of the flora of the alpine zone, New Phytologist 11:37-50); Sokal Sneath 1963:133;
class	KendallTauS_row KENDALL TAU RANK CORRELATION COEFFICIENT http://www.psych.cornell.edu/Darlington/crosstab/table5.htm Similarity [-1, 1].
class	Kulczynski1S_row KULCZYNSKI 1 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html (Kulczynski 1928) similarity [0, inf] Usage: for binary data.
class	Kulczynski2S_row KULCZYNSKI 2 SIMILARITY COEFFICIENT http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html (Sokal Sneath 1963) similarity [0,1] Usage: for binary data.
class	LanceWilliamsD_row LANCE & WILLIAMS DISTANCE http://149.170.199.144/multivar/dist.htm Range of 0 to 1.
class	ManhattanD_row MANHATTAN DISTANCE Manhattan distance = city block metric
class	MatchingS_row SIMPLE MATCHING SIMILARITY COEFFICIENT
class	MeanCensoredEuclidD_row MEAN CENSORED EUCLIDEAN DISTANCE
class	MeanEuclidD_row MEAN EUCLIDEAN DISTANCE
class	MinkowskiD_row MINKOWSKI DISTANCE http://disney.ctr.columbia.edu/jrsthesis/node66.html#SECTION00731000000000000000
class	MinkowskiInfiniteD_row MINKOWSKI INFINITE ORDER DISTANCE
class	OtsukaS_row OTSUKA SIMILARITY COEFFICIENT
class	PairwiseRankComparisonT_row PAIRWISE RANK COMPARISON TRANSFORMATION Marquardt, W.H.
class	PearsonCorrS_row PEARSON CORRELATION COEFFICIENT http://stat.tamu.edu/stat30x/notes/node39.html similarity [-1, 1] Usage: for interval & count(?) data.
class	RobinsonS_row ROBINSON SIMILARITY COEFFICIENT - ("INDEX OF AGREEMENT") Marquardt, W.H.
class	ScaledTaxonomicS_row SCALED TAXONOMIC SIMILARITY COEFFICIENT Marquardt, W.H.
class	SimpleMatchingS_row SIMPLE MATCHING SIMILARITY COEFFICIENT http://www.biology.ualberta.ca/jbrzusto/cluster.html#DistanceMeasures
class	SimpsonS_row SIMPSON SIMILARITY COEFFICIENT
class	SimRatioS_row SIMILARITY RATIO http://ag.arizona.edu/classes/rnr555/lecnotes/10.html For presence-absence data, SR reduces to the Jaccard index.
class	SoerensenS_row SOERENSEN SIMILARITY COEFFICIENT
class	SpearmanRhoS_row SPEARMAN RHO RANK CORRELATION COEFFICIENT http://www.psych.cornell.edu/Darlington/crosstab/table5.htm similarity [-1, 1].
class	TaxonomicD_row TAXONOMIC DISTANCE
class	YuleQS_row YULE'S Q SIMILARITY http://149.170.199.144/multivar/dist.htm http://crrm.univ-mrs.fr/commercial/software/dataview/appendix.html This index is a function of the cross-ratio for a 2x2 table and is independent of the marginal totals.